Variant report
| Variant | rs12223394 |
|---|---|
| Chromosome Location | chr11:33838377-33838378 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:33836179..33838790-chr11:33841362..33843388,2 | MCF-7 | breast: | |
| 2 | chr11:33837018..33838980-chr11:33863983..33865913,2 | K562 | blood: | |
| 3 | chr11:33834196..33839367-chr11:33841251..33846624,5 | K562 | blood: | |
| 4 | chr11:33833908..33835978-chr11:33836934..33839034,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000255133 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10742306 | 0.85[CHB][hapmap] |
| rs10836110 | 0.84[CHB][hapmap] |
| rs10836114 | 1.00[CEU][hapmap] |
| rs11032383 | 0.85[CHB][hapmap] |
| rs11032397 | 0.84[CHB][hapmap] |
| rs1522084 | 0.85[CHB][hapmap] |
| rs35768796 | 0.80[ASN][1000 genomes] |
| rs4756002 | 0.85[CHB][hapmap] |
| rs67044517 | 0.80[ASN][1000 genomes] |
| rs7115489 | 0.95[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs884710 | 0.85[CHB][hapmap] |
| rs953142 | 0.85[CHB][hapmap] |
| rs999479 | 0.85[CHB][hapmap] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
