Variant report

Variant	rs999479
Chromosome Location	chr11:33824936-33824937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr11:33823127-33825027	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:33824257..33826244-chr11:33828062..33830421,2	K562	blood:
2	chr11:33823964..33825741-chr11:33848946..33850618,2	K562	blood:
3	chr11:33720036..33722677-chr11:33824670..33827365,2	K562	blood:

Variant related genes	Relation type
ENSG00000255169	TF binding region
ENSG00000205177	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10742306	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10768028	0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs10768029	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836110	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10836111	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11032383	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11032397	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11032408	0.84[EUR][1000 genomes]
rs11032416	0.84[EUR][1000 genomes]
rs12223394	0.85[CHB][hapmap]
rs12224154	0.81[CEU][hapmap]
rs12806824	0.81[CEU][hapmap]
rs12807373	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1522084	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1522085	0.81[CEU][hapmap]
rs1718067	0.81[CEU][hapmap]
rs2272064	0.81[CEU][hapmap]
rs2746602	0.81[CEU][hapmap]
rs4348870	0.81[CEU][hapmap]
rs4756002	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7107237	0.91[ASN][1000 genomes]
rs7109097	0.87[EUR][1000 genomes]
rs7115489	1.00[CEU][hapmap]
rs7937643	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs831592	0.81[CEU][hapmap]
rs831595	0.81[CEU][hapmap]
rs884710	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs953142	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs999479	CD59	Cis_1M	lymphoblastoid	RTeQTL
rs999479	CD59	cis	Esophagus Muscularis	GTEx
rs999479	CD59	cis	Artery Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33824600-33830000	Weak transcription	Fetal Brain Male	brain

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