Variant report

Variant	rs11032408
Chromosome Location	chr11:33850536-33850537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33823964..33825741-chr11:33848946..33850618,2	K562	blood:
2	chr11:33847500..33851586-chr11:33855644..33857929,3	MCF-7	breast:
3	chr11:33848983..33850674-chr11:33860453..33862739,2	K562	blood:
4	chr11:33737945..33740866-chr11:33849483..33851287,2	MCF-7	breast:
5	chr11:33827463..33830110-chr11:33848684..33852679,4	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11032397	0.86[EUR][1000 genomes]
rs11032416	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7109097	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs999479	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11032408	CD59	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33850000-33851200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr11:33850200-33850600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:33850200-33850600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:33850200-33850600	Bivalent Enhancer	Adipose Nuclei	Adipose
5	chr11:33850200-33850600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
6	chr11:33850200-33850600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr11:33850200-33850600	Enhancers	Ovary	ovary
8	chr11:33850200-33850600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
9	chr11:33850200-33850600	Bivalent Enhancer	HUVEC	blood vessel
10	chr11:33850200-33850800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:33850200-33850800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:33850200-33850800	Bivalent Enhancer	Colon Smooth Muscle	Colon
13	chr11:33850200-33851000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
14	chr11:33850200-33851000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr11:33850200-33851000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
16	chr11:33850200-33851000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:33850200-33851000	Bivalent Enhancer	Fetal Brain Male	brain
18	chr11:33850200-33851000	Bivalent Enhancer	Fetal Intestine Small	intestine
19	chr11:33850200-33851200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
20	chr11:33850200-33851200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:33850200-33851200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:33850200-33851200	Bivalent/Poised TSS	Fetal Brain Female	brain
23	chr11:33850200-33851400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
24	chr11:33850200-33851400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
25	chr11:33850200-33851400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
26	chr11:33850400-33850600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:33850400-33850600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:33850400-33850600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:33850400-33850600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:33850400-33850600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:33850400-33850600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
32	chr11:33850400-33850600	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:33850400-33850600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:33850400-33850600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
35	chr11:33850400-33850600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:33850400-33850600	Bivalent/Poised TSS	Colonic Mucosa	Colon
37	chr11:33850400-33850600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
38	chr11:33850400-33850600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
39	chr11:33850400-33850600	Bivalent Enhancer	Left Ventricle	heart
40	chr11:33850400-33850600	Enhancers	Pancreas	Pancrea
41	chr11:33850400-33850600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
42	chr11:33850400-33850600	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
43	chr11:33850400-33850600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
44	chr11:33850400-33850600	Active TSS	Right Ventricle	heart
45	chr11:33850400-33850600	Bivalent/Poised TSS	A549	lung
46	chr11:33850400-33850600	Flanking Bivalent TSS/Enh	HepG2	liver
47	chr11:33850400-33850600	Enhancers	HMEC	breast
48	chr11:33850400-33850600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
49	chr11:33850400-33850600	Flanking Active TSS	NH-A	brain
50	chr11:33850400-33850600	Bivalent Enhancer	NHEK	skin

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