Variant report

Variant	rs7109097
Chromosome Location	chr11:33847995-33847996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11032397	0.89[EUR][1000 genomes]
rs11032408	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032416	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35768796	0.80[EUR][1000 genomes]
rs67044517	0.82[EUR][1000 genomes]
rs7115489	0.80[EUR][1000 genomes]
rs999479	0.87[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7109097	CD59	Cis_1M	lymphoblastoid	RTeQTL
rs7109097	CD59	cis	Artery Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33847600-33848000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:33847600-33848200	Bivalent Enhancer	Fetal Lung	lung
3	chr11:33847800-33848000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links