Variant report

Variant	rs11033397
Chromosome Location	chr11:36078941-36078942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36078052..36080407-chr11:36130815..36132735,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179241	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10836484	0.80[CEU][hapmap];0.90[TSI][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11033387	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12291985	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1499512	0.89[YRI][hapmap]
rs1499516	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs4265577	0.81[LWK][hapmap];0.83[YRI][hapmap]
rs7124427	1.00[CEU][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897224	chr11:36059983-36114348	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36058800-36093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:36059400-36082000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:36060200-36079400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:36060200-36087800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:36063600-36087000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:36070000-36094000	Weak transcription	Psoas Muscle	Psoas
7	chr11:36072000-36081000	Weak transcription	Spleen	Spleen
8	chr11:36072600-36087000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:36073000-36080600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:36073800-36087000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:36073800-36088400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:36073800-36099800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:36074200-36079800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:36074200-36081000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:36074200-36088400	Weak transcription	HSMMtube	muscle
16	chr11:36075800-36080200	Weak transcription	Fetal Brain Female	brain
17	chr11:36076000-36081000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:36076200-36079600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:36076200-36080400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:36076600-36080400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:36076600-36081000	Weak transcription	Fetal Lung	lung
22	chr11:36076600-36082800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:36077400-36081000	Weak transcription	Brain Anterior Caudate	brain
24	chr11:36077600-36079800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr11:36077800-36079400	Enhancers	Fetal Muscle Leg	muscle
26	chr11:36077800-36080000	Enhancers	Adipose Nuclei	Adipose
27	chr11:36078000-36080000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:36078000-36080600	Enhancers	HUVEC	blood vessel
29	chr11:36078000-36081400	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr11:36078200-36079000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:36078200-36080200	Enhancers	Ovary	ovary
32	chr11:36078200-36080400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:36078400-36079000	Enhancers	Fetal Heart	heart
34	chr11:36078400-36079200	Enhancers	Left Ventricle	heart
35	chr11:36078400-36085400	Weak transcription	Brain Substantia Nigra	brain
36	chr11:36078600-36079000	Enhancers	Right Atrium	heart
37	chr11:36078600-36079000	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr11:36078600-36079000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr11:36078600-36079800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr11:36078600-36079800	Genic enhancers	Fetal Stomach	stomach
41	chr11:36078600-36080000	Enhancers	HSMM	muscle
42	chr11:36078600-36080600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:36078600-36088000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:36078800-36079000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:36078800-36079200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr11:36078800-36082600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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