Variant report

Variant	rs10836484
Chromosome Location	chr11:36071472-36071473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11033383	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11033387	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11033397	0.80[CEU][hapmap];0.90[TSI][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12291985	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs262453	0.88[CHB][hapmap]
rs262454	0.85[ASN][1000 genomes]
rs34365273	0.85[ASN][1000 genomes]
rs35725524	0.88[ASN][1000 genomes]
rs7124427	0.80[CEU][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7936667	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897224	chr11:36059983-36114348	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36049600-36073600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:36055800-36072600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:36057400-36073800	Weak transcription	Hela-S3	cervix
4	chr11:36058800-36074600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:36058800-36093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:36059000-36073400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:36059000-36075200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:36059400-36071600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:36059400-36071800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:36059400-36082000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr11:36059800-36078600	Weak transcription	HSMM	muscle
12	chr11:36060200-36071800	Weak transcription	Aorta	Aorta
13	chr11:36060200-36079400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:36060200-36087800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:36060400-36072800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:36060400-36076200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:36061600-36075400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:36063600-36087000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:36063800-36074800	Weak transcription	NHEK	skin
20	chr11:36063800-36075600	Weak transcription	NHLF	lung
21	chr11:36064200-36072800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:36064400-36073200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:36065600-36078000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:36066000-36071800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:36068800-36072800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:36069200-36078200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr11:36069400-36072200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:36069600-36071800	Weak transcription	Fetal Brain Female	brain
29	chr11:36069600-36071800	Weak transcription	Spleen	Spleen
30	chr11:36069600-36072200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:36069600-36074400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr11:36069800-36072000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr11:36069800-36072000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:36069800-36072200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:36069800-36072800	Enhancers	Ovary	ovary
36	chr11:36069800-36078600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:36070000-36071600	Enhancers	Fetal Intestine Large	intestine
38	chr11:36070000-36077000	Weak transcription	Brain Germinal Matrix	brain
39	chr11:36070000-36094000	Weak transcription	Psoas Muscle	Psoas
40	chr11:36070200-36071800	Enhancers	Fetal Kidney	kidney
41	chr11:36070400-36072800	Weak transcription	K562	blood
42	chr11:36070600-36071600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr11:36070600-36071800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:36070600-36071800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:36070600-36072000	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:36070600-36073000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr11:36070600-36074400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:36070800-36071600	Enhancers	Fetal Stomach	stomach
49	chr11:36070800-36071800	Weak transcription	Fetal Brain Male	brain
50	chr11:36070800-36072000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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