Variant report

Variant	rs7124427
Chromosome Location	chr11:36089700-36089701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36088936..36090536-chr11:36091662..36094049,2	K562	blood:
2	chr11:36087632..36090682-chr11:36127841..36131413,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10836484	0.80[CEU][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11033387	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11033397	1.00[CEU][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12291985	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897224	chr11:36059983-36114348	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36058800-36093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:36070000-36094000	Weak transcription	Psoas Muscle	Psoas
3	chr11:36073800-36099800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:36080200-36093600	Weak transcription	Ovary	ovary
5	chr11:36081800-36091400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:36083600-36090200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:36087600-36093600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:36087600-36093800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:36087600-36094600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:36088000-36093600	Weak transcription	NHDF-Ad	bronchial
11	chr11:36088200-36089800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:36088400-36090400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:36088600-36094800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:36088800-36089800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:36088800-36090000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:36088800-36090200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:36088800-36090600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:36088800-36090600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:36088800-36090600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:36088800-36090800	Weak transcription	Brain Substantia Nigra	brain
21	chr11:36088800-36091000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:36088800-36091400	Weak transcription	HSMMtube	muscle
23	chr11:36088800-36094000	Weak transcription	HSMM	muscle
24	chr11:36089000-36093600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:36089000-36094800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:36089000-36095400	Weak transcription	Fetal Intestine Small	intestine
27	chr11:36089000-36103400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr11:36089200-36089800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:36089600-36090000	ZNF genes & repeats	K562	blood
30	chr11:36089600-36090400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:36089600-36093400	Weak transcription	Fetal Stomach	stomach

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