Variant report

Variant	rs11033383
Chromosome Location	chr11:36059179-36059180
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35852353..35854409-chr11:36056602..36059276,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10836484	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11033382	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11033387	0.91[ASN][1000 genomes]
rs12291985	0.91[ASN][1000 genomes]
rs2281693	0.93[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs262453	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs262454	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34365273	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35725524	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57224801	0.87[EUR][1000 genomes]
rs7936667	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36045000-36059800	Weak transcription	Fetal Kidney	kidney
2	chr11:36049600-36073600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:36050000-36065800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:36052200-36069200	Weak transcription	Psoas Muscle	Psoas
5	chr11:36053200-36059800	Weak transcription	Fetal Lung	lung
6	chr11:36053600-36069600	Weak transcription	Brain Angular Gyrus	brain
7	chr11:36053800-36061400	Weak transcription	Fetal Brain Male	brain
8	chr11:36055000-36059400	Enhancers	Fetal Heart	heart
9	chr11:36055200-36059400	Enhancers	HMEC	breast
10	chr11:36055400-36068200	Weak transcription	Brain Anterior Caudate	brain
11	chr11:36055800-36061200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:36055800-36070200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:36055800-36070400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:36055800-36072600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:36056000-36063400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:36056000-36065800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:36056200-36063600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:36056200-36066800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:36056200-36070200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:36056800-36059400	Enhancers	Pancreas	Pancrea
21	chr11:36056800-36063000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:36056800-36063200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:36057000-36060400	Enhancers	Ovary	ovary
24	chr11:36057200-36059800	Strong transcription	Fetal Intestine Small	intestine
25	chr11:36057200-36069200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:36057400-36059400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:36057400-36060200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:36057400-36060600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
29	chr11:36057400-36061800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:36057400-36070000	Weak transcription	Fetal Intestine Large	intestine
31	chr11:36057400-36073800	Weak transcription	Hela-S3	cervix
32	chr11:36057600-36059400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:36057600-36059400	Enhancers	Brain Hippocampus Middle	brain
34	chr11:36057600-36059800	Genic enhancers	Fetal Muscle Trunk	muscle
35	chr11:36057600-36060000	Enhancers	Brain Germinal Matrix	brain
36	chr11:36057600-36060200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:36057600-36060200	Enhancers	Brain Substantia Nigra	brain
38	chr11:36057600-36060400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:36058200-36059600	Enhancers	Muscle Satellite Cultured Cells	--
40	chr11:36058200-36059800	Genic enhancers	HSMM	muscle
41	chr11:36058400-36059200	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr11:36058400-36059400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:36058400-36059400	Enhancers	NH-A	brain
44	chr11:36058400-36059800	Genic enhancers	Fetal Stomach	stomach
45	chr11:36058400-36060400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:36058400-36062200	Enhancers	NHLF	lung
47	chr11:36058600-36059400	Genic enhancers	HSMMtube	muscle
48	chr11:36058600-36059600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:36058600-36060200	Enhancers	Adipose Nuclei	Adipose
50	chr11:36058600-36060200	Genic enhancers	Fetal Muscle Leg	muscle

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