Variant report

Variant	rs2281693
Chromosome Location	chr11:36057350-36057351
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35852353..35854409-chr11:36056602..36059276,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11033382	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11033383	0.93[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs262450	0.81[CEU][hapmap]
rs262453	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs262454	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34365273	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35725524	0.83[EUR][1000 genomes]
rs57224801	0.87[EUR][1000 genomes]
rs7936667	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36041600-36058400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:36045000-36059800	Weak transcription	Fetal Kidney	kidney
3	chr11:36046400-36058600	Weak transcription	Spleen	Spleen
4	chr11:36046600-36059000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:36049600-36073600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:36050000-36065800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:36050800-36057600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:36052000-36057800	Weak transcription	Lung	lung
9	chr11:36052200-36069200	Weak transcription	Psoas Muscle	Psoas
10	chr11:36052600-36057600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:36053200-36059800	Weak transcription	Fetal Lung	lung
12	chr11:36053400-36058600	Weak transcription	Adipose Nuclei	Adipose
13	chr11:36053400-36058600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:36053600-36057800	Weak transcription	Fetal Brain Female	brain
15	chr11:36053600-36058400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:36053600-36069600	Weak transcription	Brain Angular Gyrus	brain
17	chr11:36053800-36061400	Weak transcription	Fetal Brain Male	brain
18	chr11:36054400-36059000	Enhancers	Placenta Amnion	Placenta Amnion
19	chr11:36054800-36057400	Enhancers	NHLF	lung
20	chr11:36054800-36057600	Enhancers	HSMM	muscle
21	chr11:36055000-36059400	Enhancers	Fetal Heart	heart
22	chr11:36055200-36059400	Enhancers	HMEC	breast
23	chr11:36055400-36057600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:36055400-36057600	Weak transcription	Brain Substantia Nigra	brain
25	chr11:36055400-36057800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:36055400-36068200	Weak transcription	Brain Anterior Caudate	brain
27	chr11:36055600-36057400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:36055800-36058600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:36055800-36061200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:36055800-36070200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr11:36055800-36070400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:36055800-36072600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:36056000-36057400	Enhancers	Fetal Intestine Large	intestine
34	chr11:36056000-36057400	Enhancers	Osteobl	bone
35	chr11:36056000-36057600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:36056000-36057600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:36056000-36057600	Weak transcription	Brain Germinal Matrix	brain
38	chr11:36056000-36057600	Weak transcription	Fetal Stomach	stomach
39	chr11:36056000-36063400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:36056000-36065800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr11:36056200-36057400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:36056200-36057800	Weak transcription	Fetal Muscle Leg	muscle
43	chr11:36056200-36063600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:36056200-36066800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:36056200-36070200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:36056400-36057400	Enhancers	Colon Smooth Muscle	Colon
47	chr11:36056400-36058600	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr11:36056600-36057600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:36056800-36057400	Enhancers	Esophagus	oesophagus
50	chr11:36056800-36057600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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