Variant report

Variant	rs7936667
Chromosome Location	chr11:36055045-36055046
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36049862..36051766-chr11:36054081..36056545,2	MCF-7	breast:
2	chr11:35963672..35965837-chr11:36053364..36055116,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179241	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10836484	0.85[ASN][1000 genomes]
rs11033382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11033383	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11033387	0.88[ASN][1000 genomes]
rs12291985	0.88[ASN][1000 genomes]
rs2281693	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs262453	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs262454	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34365273	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35725524	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57224801	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36041600-36058400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:36045000-36059800	Weak transcription	Fetal Kidney	kidney
3	chr11:36045800-36056000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:36046200-36055200	Weak transcription	HMEC	breast
5	chr11:36046200-36055800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:36046200-36056000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:36046200-36056000	Weak transcription	NHEK	skin
8	chr11:36046400-36056800	Weak transcription	Esophagus	oesophagus
9	chr11:36046400-36058600	Weak transcription	Spleen	Spleen
10	chr11:36046600-36059000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:36049600-36055600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:36049600-36073600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:36050000-36065800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:36050800-36055400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:36050800-36057600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:36051200-36055200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:36051400-36057200	Enhancers	HSMMtube	muscle
18	chr11:36052000-36057800	Weak transcription	Lung	lung
19	chr11:36052200-36069200	Weak transcription	Psoas Muscle	Psoas
20	chr11:36052600-36056000	Weak transcription	Osteobl	bone
21	chr11:36052600-36057600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:36053000-36055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr11:36053000-36056400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:36053200-36055200	Weak transcription	Brain Germinal Matrix	brain
25	chr11:36053200-36055600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:36053200-36056200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:36053200-36059800	Weak transcription	Fetal Lung	lung
28	chr11:36053400-36055400	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:36053400-36058600	Weak transcription	Adipose Nuclei	Adipose
30	chr11:36053400-36058600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:36053600-36056200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:36053600-36056800	Weak transcription	Pancreas	Pancrea
33	chr11:36053600-36057000	Weak transcription	Ovary	ovary
34	chr11:36053600-36057200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:36053600-36057800	Weak transcription	Fetal Brain Female	brain
36	chr11:36053600-36058400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:36053600-36069600	Weak transcription	Brain Angular Gyrus	brain
38	chr11:36053800-36055800	Weak transcription	Fetal Intestine Small	intestine
39	chr11:36053800-36055800	Weak transcription	NHDF-Ad	bronchial
40	chr11:36053800-36056200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:36053800-36056800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:36053800-36061400	Weak transcription	Fetal Brain Male	brain
43	chr11:36054200-36055400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:36054200-36056200	Enhancers	H1 Cell Line	embryonic stem cell
45	chr11:36054400-36056000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:36054400-36059000	Enhancers	Placenta Amnion	Placenta Amnion
47	chr11:36054600-36055400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:36054600-36055400	Enhancers	Fetal Stomach	stomach
49	chr11:36054600-36055800	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr11:36054600-36056000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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