Variant report

Variant	rs57224801
Chromosome Location	chr11:36053640-36053641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35963672..35965837-chr11:36053364..36055116,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179241	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11033382	0.87[EUR][1000 genomes]
rs11033383	0.87[EUR][1000 genomes]
rs2281693	0.87[EUR][1000 genomes]
rs262453	0.84[EUR][1000 genomes]
rs262454	0.87[EUR][1000 genomes]
rs34365273	0.87[EUR][1000 genomes]
rs7936667	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36041600-36054200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:36041600-36058400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:36041800-36055000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:36045000-36059800	Weak transcription	Fetal Kidney	kidney
5	chr11:36045800-36056000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:36046200-36055200	Weak transcription	HMEC	breast
7	chr11:36046200-36055800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:36046200-36056000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:36046200-36056000	Weak transcription	NHEK	skin
10	chr11:36046400-36054800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:36046400-36056800	Weak transcription	Esophagus	oesophagus
12	chr11:36046400-36058600	Weak transcription	Spleen	Spleen
13	chr11:36046600-36054200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:36046600-36059000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:36046800-36054800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:36048200-36054600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:36048400-36054800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:36048400-36054800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:36048400-36054800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:36049600-36055600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:36049600-36073600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:36050000-36054800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:36050000-36065800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr11:36050800-36055400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:36050800-36057600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:36051000-36053800	Enhancers	NHDF-Ad	bronchial
27	chr11:36051200-36055200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:36051400-36054800	Enhancers	Fetal Muscle Leg	muscle
29	chr11:36051400-36057200	Enhancers	HSMMtube	muscle
30	chr11:36051600-36053800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:36051600-36053800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:36051600-36054600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:36051800-36053800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:36051800-36053800	Enhancers	Fetal Brain Male	brain
35	chr11:36052000-36054600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr11:36052000-36057800	Weak transcription	Lung	lung
37	chr11:36052200-36069200	Weak transcription	Psoas Muscle	Psoas
38	chr11:36052400-36054600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:36052400-36054800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:36052600-36053800	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr11:36052600-36056000	Weak transcription	Osteobl	bone
42	chr11:36052600-36057600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:36053000-36054800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:36053000-36055000	Weak transcription	Fetal Heart	heart
45	chr11:36053000-36055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr11:36053000-36056400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:36053200-36053800	Enhancers	Fetal Intestine Small	intestine
48	chr11:36053200-36054200	Weak transcription	Brain Anterior Caudate	brain
49	chr11:36053200-36055200	Weak transcription	Brain Germinal Matrix	brain
50	chr11:36053200-36055600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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