Variant report

Variant	rs262453
Chromosome Location	chr11:36056922-36056923
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35852353..35854409-chr11:36056602..36059276,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10836484	0.88[CHB][hapmap]
rs11033382	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11033383	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs2281693	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs262450	0.84[CEU][hapmap]
rs262454	0.97[EUR][1000 genomes]
rs34365273	0.97[EUR][1000 genomes]
rs35725524	0.81[EUR][1000 genomes]
rs57224801	0.84[EUR][1000 genomes]
rs7936667	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36041600-36058400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:36045000-36059800	Weak transcription	Fetal Kidney	kidney
3	chr11:36046400-36058600	Weak transcription	Spleen	Spleen
4	chr11:36046600-36059000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:36049600-36073600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:36050000-36065800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:36050800-36057600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:36051400-36057200	Enhancers	HSMMtube	muscle
9	chr11:36052000-36057800	Weak transcription	Lung	lung
10	chr11:36052200-36069200	Weak transcription	Psoas Muscle	Psoas
11	chr11:36052600-36057600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:36053200-36059800	Weak transcription	Fetal Lung	lung
13	chr11:36053400-36058600	Weak transcription	Adipose Nuclei	Adipose
14	chr11:36053400-36058600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:36053600-36057000	Weak transcription	Ovary	ovary
16	chr11:36053600-36057200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:36053600-36057800	Weak transcription	Fetal Brain Female	brain
18	chr11:36053600-36058400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:36053600-36069600	Weak transcription	Brain Angular Gyrus	brain
20	chr11:36053800-36061400	Weak transcription	Fetal Brain Male	brain
21	chr11:36054400-36059000	Enhancers	Placenta Amnion	Placenta Amnion
22	chr11:36054800-36057200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:36054800-36057200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:36054800-36057400	Enhancers	NHLF	lung
25	chr11:36054800-36057600	Enhancers	HSMM	muscle
26	chr11:36055000-36057200	Enhancers	NH-A	brain
27	chr11:36055000-36059400	Enhancers	Fetal Heart	heart
28	chr11:36055200-36059400	Enhancers	HMEC	breast
29	chr11:36055400-36057600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:36055400-36057600	Weak transcription	Brain Substantia Nigra	brain
31	chr11:36055400-36057800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:36055400-36068200	Weak transcription	Brain Anterior Caudate	brain
33	chr11:36055600-36057400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:36055800-36057200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:36055800-36057200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:36055800-36057200	Enhancers	Placenta	Placenta
37	chr11:36055800-36057200	Enhancers	NHDF-Ad	bronchial
38	chr11:36055800-36058600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr11:36055800-36061200	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr11:36055800-36070200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr11:36055800-36070400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:36055800-36072600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr11:36056000-36057000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr11:36056000-36057200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:36056000-36057200	Weak transcription	Brain Hippocampus Middle	brain
46	chr11:36056000-36057200	Enhancers	NHEK	skin
47	chr11:36056000-36057400	Enhancers	Fetal Intestine Large	intestine
48	chr11:36056000-36057400	Enhancers	Osteobl	bone
49	chr11:36056000-36057600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:36056000-36057600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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