Variant report

Variant	rs11038326
Chromosome Location	chr11:45162855-45162856
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11038320	1.00[AMR][1000 genomes]
rs11038322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275470	1.00[AMR][1000 genomes]
rs12275518	1.00[AMR][1000 genomes]
rs12275684	1.00[AMR][1000 genomes]
rs12280738	1.00[AMR][1000 genomes]
rs12296068	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1318730	1.00[MEX][hapmap]
rs57536136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60845464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464554	1.00[AMR][1000 genomes]
rs73464561	1.00[AMR][1000 genomes]
rs73464565	1.00[AMR][1000 genomes]
rs73464579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs963696	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825852	chr11:45141386-45228580	Bivalent/Poised TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv541025	chr11:45154352-45193352	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45162400-45163400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr11:45162800-45163600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:45162800-45163600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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