Variant report

Variant	rs73464561
Chromosome Location	chr11:45150117-45150118
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11038320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11038322	1.00[AMR][1000 genomes]
rs11038326	1.00[AMR][1000 genomes]
rs12275470	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275518	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275684	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12296068	1.00[AMR][1000 genomes]
rs57536136	1.00[AMR][1000 genomes]
rs60845464	1.00[AMR][1000 genomes]
rs73464554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464579	1.00[AMR][1000 genomes]
rs73464580	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825852	chr11:45141386-45228580	Bivalent/Poised TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45149400-45150200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:45149800-45150200	Active TSS	A549	lung
3	chr11:45149800-45150200	Active TSS	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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