Variant report

Variant	rs11038357
Chromosome Location	chr11:45237858-45237859
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10444286	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs10769123	0.82[ASW][hapmap];1.00[CHB][hapmap]
rs11038341	1.00[CHB][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes]
rs11038350	0.95[CEU][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12284404	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17723470	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940871	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11038357	DDB2	cis	parietal	SCAN
rs11038357	PRDM11	cis	Thyroid	GTEx
rs11038357	SYT13	cis	Thyroid	GTEx

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45205800-45238800	Weak transcription	HSMMtube	muscle
2	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr11:45206000-45247800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:45206600-45251600	Weak transcription	HepG2	liver
5	chr11:45210200-45247600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:45210200-45251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:45224800-45247800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:45227400-45241600	Weak transcription	Primary B cells from cord blood	blood
9	chr11:45227400-45242600	Weak transcription	Liver	Liver
10	chr11:45227800-45247400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:45229000-45246600	Weak transcription	Primary T cells from cord blood	blood
12	chr11:45231400-45242400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:45232000-45239200	Weak transcription	NH-A	brain
14	chr11:45232000-45247600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:45232200-45247600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:45232200-45247800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:45232400-45241000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:45232400-45241800	Weak transcription	Fetal Kidney	kidney
19	chr11:45232400-45247000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:45232400-45247600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:45232400-45247800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:45232400-45247800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:45232400-45247800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:45232400-45250400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:45232600-45238000	Strong transcription	Fetal Intestine Large	intestine
26	chr11:45232600-45238000	Strong transcription	Fetal Intestine Small	intestine
27	chr11:45232600-45245200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:45232600-45247000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:45232600-45255200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:45232800-45246000	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:45232800-45247200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:45232800-45248000	Weak transcription	Fetal Brain Male	brain
33	chr11:45233000-45245000	Weak transcription	Hela-S3	cervix
34	chr11:45233000-45245400	Weak transcription	Brain Substantia Nigra	brain
35	chr11:45233600-45248800	Weak transcription	Fetal Heart	heart
36	chr11:45233800-45246400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:45234600-45241000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:45234600-45242400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:45234800-45247000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:45235000-45241000	Weak transcription	Primary B cells from peripheral blood	blood
41	chr11:45235000-45245000	Weak transcription	Brain Angular Gyrus	brain
42	chr11:45235000-45247200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:45235000-45247200	Weak transcription	Placenta	Placenta
44	chr11:45235200-45240800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:45235200-45241000	Weak transcription	Ovary	ovary
46	chr11:45235200-45241200	Weak transcription	Brain Anterior Caudate	brain
47	chr11:45235200-45241400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:45235200-45242200	Weak transcription	Fetal Brain Female	brain
49	chr11:45235200-45242600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr11:45235200-45245600	Weak transcription	Gastric	stomach

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