The 2.0 version of rSNPBase

Variant report

Variant rs12284404
Chromosome Location chr11:45228686-45228687
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:45202800-45234000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr11:45203000-45237000 Weak transcription Small Intestine intestine
3 chr11:45203400-45230400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr11:45203400-45231000 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr11:45203600-45231000 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr11:45205200-45230400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr11:45205800-45238800 Weak transcription HSMMtube muscle
8 chr11:45205800-45251800 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr11:45206000-45247800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr11:45206600-45251600 Weak transcription HepG2 liver
11 chr11:45207000-45232400 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr11:45207200-45230200 Weak transcription Colonic Mucosa Colon
13 chr11:45207600-45229400 Weak transcription Placenta Amnion Placenta Amnion
14 chr11:45209000-45235200 Weak transcription Primary T cells fromperipheralblood blood
15 chr11:45210000-45234200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr11:45210200-45230200 Weak transcription Brain Angular Gyrus brain
17 chr11:45210200-45247600 Weak transcription H9 Cell Line embryonic stem cell
18 chr11:45210200-45251600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr11:45210400-45229600 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr11:45210400-45229600 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr11:45210400-45230400 Weak transcription Placenta Placenta
22 chr11:45210400-45230400 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr11:45210400-45230600 Weak transcription Fetal Brain Male brain
24 chr11:45210400-45230800 Weak transcription Brain Substantia Nigra brain
25 chr11:45210400-45230800 Weak transcription Rectal Smooth Muscle rectum
26 chr11:45210400-45231200 Weak transcription HUES48 Cell Line embryonic stem cell
27 chr11:45210400-45232000 Weak transcription Hela-S3 cervix
28 chr11:45210600-45229600 Weak transcription Gastric stomach
29 chr11:45211800-45229600 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr11:45211800-45230200 Weak transcription Brain Cingulate Gyrus brain
31 chr11:45211800-45231000 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr11:45212800-45229800 Weak transcription Colon Smooth Muscle Colon
33 chr11:45214400-45234800 Weak transcription A549 lung
34 chr11:45214600-45231000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr11:45215600-45230200 Weak transcription Psoas Muscle Psoas
36 chr11:45215800-45230000 Weak transcription Brain Hippocampus Middle brain
37 chr11:45215800-45231000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr11:45218600-45230000 Weak transcription Fetal Kidney kidney
39 chr11:45221200-45230600 Weak transcription Primary hematopoietic stem cells blood
40 chr11:45221200-45231400 Weak transcription Thymus Thymus
41 chr11:45221800-45230400 Weak transcription Ovary ovary
42 chr11:45222600-45230200 Weak transcription Fetal Lung lung
43 chr11:45223400-45229600 Strong transcription Fetal Intestine Small intestine
44 chr11:45223400-45230800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr11:45223600-45229600 Strong transcription Fetal Intestine Large intestine
46 chr11:45224600-45231000 Strong transcription Primary hematopoietic stem cells short term culture blood
47 chr11:45224800-45229600 Weak transcription Aorta Aorta
48 chr11:45224800-45247800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr11:45225200-45228800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr11:45225400-45230400 Weak transcription Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015