Variant report

Variant	rs3758723
Chromosome Location	chr11:45243512-45243513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45230472..45232780-chr11:45243145..45245463,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10444286	1.00[CHB][hapmap]
rs10769123	1.00[CHB][hapmap]
rs11038341	1.00[CHB][hapmap];0.83[TSI][hapmap]
rs11038350	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11038357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12284404	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17723470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940871	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3758723	DDB2	cis	parietal	SCAN
rs3758723	PRDM11	cis	Thyroid	GTEx
rs3758723	SYT13	cis	Thyroid	GTEx

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr11:45206000-45247800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr11:45206600-45251600	Weak transcription	HepG2	liver
4	chr11:45210200-45247600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:45210200-45251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:45224800-45247800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:45227800-45247400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:45229000-45246600	Weak transcription	Primary T cells from cord blood	blood
9	chr11:45232000-45247600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:45232200-45247600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:45232200-45247800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:45232400-45247000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:45232400-45247600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:45232400-45247800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:45232400-45247800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:45232400-45247800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:45232400-45250400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:45232600-45245200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:45232600-45247000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:45232600-45255200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:45232800-45246000	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:45232800-45247200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:45232800-45248000	Weak transcription	Fetal Brain Male	brain
24	chr11:45233000-45245000	Weak transcription	Hela-S3	cervix
25	chr11:45233000-45245400	Weak transcription	Brain Substantia Nigra	brain
26	chr11:45233600-45248800	Weak transcription	Fetal Heart	heart
27	chr11:45233800-45246400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:45234800-45247000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:45235000-45245000	Weak transcription	Brain Angular Gyrus	brain
30	chr11:45235000-45247200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr11:45235000-45247200	Weak transcription	Placenta	Placenta
32	chr11:45235200-45245600	Weak transcription	Gastric	stomach
33	chr11:45235200-45246000	Weak transcription	A549	lung
34	chr11:45235200-45246400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:45235200-45247600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:45235200-45247600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:45235200-45247600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:45235200-45247800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:45235400-45246000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:45235400-45246000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:45235400-45247600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:45235600-45245200	Weak transcription	Esophagus	oesophagus
43	chr11:45235600-45245400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr11:45235600-45245600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr11:45235600-45247800	Weak transcription	Colonic Mucosa	Colon
46	chr11:45235600-45251800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:45235600-45255000	Strong transcription	Fetal Stomach	stomach
48	chr11:45235800-45247600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:45236200-45245400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:45236200-45246000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links