Variant report

Variant	rs11038366
Chromosome Location	chr11:45258966-45258967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1000665	0.90[CHB][hapmap]
rs10838436	0.90[CHB][hapmap];0.81[CHD][hapmap]
rs11601021	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12274428	0.98[ASN][1000 genomes]
rs12278234	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12362429	0.90[CHB][hapmap]
rs12362444	0.90[CHB][hapmap]
rs3180446	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755940	0.90[CHB][hapmap]
rs751198	0.90[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11038366	SYT13	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45239800-45265400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:45249800-45273800	Weak transcription	Spleen	Spleen
4	chr11:45250800-45259200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:45252600-45264600	Weak transcription	Fetal Intestine Large	intestine
6	chr11:45254800-45259400	Weak transcription	Fetal Brain Female	brain
7	chr11:45255400-45259400	Weak transcription	Fetal Brain Male	brain
8	chr11:45255800-45273800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:45256200-45259000	Weak transcription	Fetal Stomach	stomach
10	chr11:45257000-45264600	Weak transcription	Fetal Intestine Small	intestine
11	chr11:45257800-45259200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:45258400-45260000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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