Variant report

Variant	rs751198
Chromosome Location	chr11:45280653-45280654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1000665	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838436	1.00[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs10838439	0.85[AMR][1000 genomes]
rs11038366	0.90[CHB][hapmap]
rs11038371	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601021	0.90[CHB][hapmap]
rs12278234	0.90[CHB][hapmap]
rs12362429	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.80[MEX][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12362444	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12362448	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2863179	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2863183	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs3180446	0.90[CHB][hapmap]
rs4755308	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755940	0.91[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];0.81[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124508	0.81[CEU][hapmap];0.89[GIH][hapmap];0.83[LWK][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs751197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935226	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs7942231	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs751198	SYT13	cis	normal skin	skin_eQTL
rs751198	HARBI1	cis	parietal	SCAN
rs751198	SYT13	cis	cerebellum	SCAN
rs751198	SYT13	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45265400-45281200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:45272800-45281200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:45274400-45281000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:45274400-45281200	Weak transcription	Pancreas	Pancrea
5	chr11:45274400-45281400	Weak transcription	Gastric	stomach
6	chr11:45274600-45281000	Weak transcription	HSMM	muscle
7	chr11:45275600-45281200	Weak transcription	HSMMtube	muscle
8	chr11:45276000-45281000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:45276000-45281000	Weak transcription	NH-A	brain
10	chr11:45276200-45281000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:45277200-45280800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:45279200-45282600	Enhancers	Fetal Stomach	stomach
13	chr11:45279600-45282400	Enhancers	Fetal Lung	lung
14	chr11:45279800-45282600	Enhancers	Fetal Brain Male	brain
15	chr11:45280000-45281800	Enhancers	Brain Germinal Matrix	brain
16	chr11:45280000-45282400	Enhancers	A549	lung
17	chr11:45280200-45281200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:45280200-45282600	Enhancers	Fetal Brain Female	brain
19	chr11:45280400-45281400	Enhancers	Hela-S3	cervix
20	chr11:45280400-45281600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:45280400-45282800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr11:45280400-45283000	Enhancers	Fetal Intestine Small	intestine
23	chr11:45280600-45280800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr11:45280600-45281400	Enhancers	Colonic Mucosa	Colon
25	chr11:45280600-45281400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
26	chr11:45280600-45282400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr11:45280600-45282600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:45280600-45282600	Enhancers	Fetal Intestine Large	intestine

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