Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1000665	0.82[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10444286	0.82[JPT][hapmap]
rs10769137	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11038339	0.82[JPT][hapmap]
rs11038341	0.82[JPT][hapmap]
rs11038371	0.82[AMR][1000 genomes]
rs12362429	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12362444	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12362448	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2863179	0.89[AMR][1000 genomes]
rs2863183	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs3886790	0.82[JPT][hapmap]
rs4755308	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4755940	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7124508	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs751197	0.85[AMR][1000 genomes]
rs751198	0.85[AMR][1000 genomes]
rs751995	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7935226	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs7942231	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10838439	SYT13	cis	Skin Sun Exposed Lower leg	GTEx
rs10838439	SYT13	cis	normal skin	skin_eQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45284400-45290200	Enhancers	Fetal Intestine Large	intestine
2	chr11:45287000-45289600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:45287400-45289800	Weak transcription	Fetal Brain Female	brain
4	chr11:45288400-45289600	Enhancers	Duodenum Mucosa	Duodenum
5	chr11:45288600-45289800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:45288600-45290000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:45288800-45289600	Enhancers	Colonic Mucosa	Colon
8	chr11:45288800-45289800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:45288800-45289800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:45288800-45290400	Genic enhancers	Fetal Intestine Small	intestine
11	chr11:45289000-45289600	Weak transcription	Pancreas	Pancrea
12	chr11:45289000-45289800	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr11:45289000-45289800	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
14	chr11:45289000-45290000	Flanking Active TSS	A549	lung
15	chr11:45289000-45292600	Weak transcription	Gastric	stomach
16	chr11:45289200-45289600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:45289200-45289600	Bivalent Enhancer	Brain Germinal Matrix	brain
18	chr11:45289200-45289800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:45289400-45290000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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