Variant report

Variant	rs2863183
Chromosome Location	chr11:45304265-45304266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1000665	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10769137	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10838439	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs11038371	0.83[EUR][1000 genomes]
rs2863179	0.84[EUR][1000 genomes]
rs4755308	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7124508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs751197	0.83[EUR][1000 genomes]
rs751198	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs751995	0.83[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7935226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2863183	SYT13	cis	Skin Sun Exposed Lower leg	GTEx
rs2863183	SYT13	cis	normal skin	skin_eQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45301000-45305000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:45303000-45304600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:45303200-45304800	Enhancers	Fetal Intestine Large	intestine
4	chr11:45303800-45304400	Enhancers	Fetal Kidney	kidney
5	chr11:45303800-45304800	Enhancers	Fetal Brain Female	brain
6	chr11:45304000-45305000	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr11:45304000-45306400	Weak transcription	Fetal Intestine Small	intestine
8	chr11:45304000-45306800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:45304200-45304600	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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