Variant report

Variant	rs4755308
Chromosome Location	chr11:45294152-45294153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1000665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769137	0.89[EUR][1000 genomes]
rs10838436	0.94[ASN][1000 genomes]
rs10838439	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038371	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12362429	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12362444	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12362448	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2863179	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2863183	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4755940	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7124508	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs751197	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs751198	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs751995	0.90[EUR][1000 genomes]
rs7935226	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7942231	0.85[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4755308	SYT13	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45289800-45294400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:45289800-45294600	Weak transcription	Pancreas	Pancrea
3	chr11:45290200-45294600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:45291800-45294200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr11:45293200-45294200	Weak transcription	A549	lung
6	chr11:45293200-45294600	Weak transcription	Gastric	stomach
7	chr11:45293800-45294800	Enhancers	Fetal Intestine Small	intestine
8	chr11:45293800-45295200	Enhancers	Duodenum Mucosa	Duodenum
9	chr11:45293800-45295200	Enhancers	Stomach Mucosa	stomach
10	chr11:45293800-45295200	Enhancers	HMEC	breast
11	chr11:45294000-45294600	Enhancers	HUVEC	blood vessel
12	chr11:45294000-45294800	Enhancers	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links