Variant report

Variant	rs10769137
Chromosome Location	chr11:45300325-45300326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1000665	0.87[EUR][1000 genomes]
rs10838439	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10838447	0.85[AMR][1000 genomes]
rs10838448	0.85[AMR][1000 genomes]
rs12362429	0.85[EUR][1000 genomes]
rs12362444	0.85[EUR][1000 genomes]
rs12362448	0.85[EUR][1000 genomes]
rs2863183	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4755308	0.89[EUR][1000 genomes]
rs4755940	0.85[EUR][1000 genomes]
rs7124508	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs751995	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7935226	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7942231	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10769137	SYT13	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45295200-45303600	Weak transcription	Fetal Intestine Small	intestine
2	chr11:45299000-45302400	Enhancers	Fetal Brain Male	brain
3	chr11:45299800-45300400	Bivalent Enhancer	Brain Germinal Matrix	brain
4	chr11:45299800-45301000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:45300000-45300400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:45300000-45300800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:45300000-45301400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:45300200-45300600	Active TSS	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links