Variant report

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1000665	0.90[CHB][hapmap]
rs10769123	0.83[MEX][hapmap]
rs10838436	0.90[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs11038341	0.83[MEX][hapmap]
rs11038366	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12274428	0.96[ASN][1000 genomes]
rs12278234	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12362429	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs12362444	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs3180446	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4755940	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs751198	0.90[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11601021	SYT13	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:45249800-45273800	Weak transcription	Spleen	Spleen
3	chr11:45255800-45273800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:45259800-45279800	Weak transcription	Fetal Brain Male	brain
5	chr11:45261200-45268800	Weak transcription	Fetal Stomach	stomach
6	chr11:45262000-45266600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:45262000-45271400	Weak transcription	Brain Substantia Nigra	brain
8	chr11:45263400-45267200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:45264200-45268000	Strong transcription	Fetal Brain Female	brain
10	chr11:45264400-45280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:45265000-45267800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:45265400-45268200	Strong transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:45265400-45270000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:45265400-45281200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:45265600-45276400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:45265800-45267800	Genic enhancers	Fetal Intestine Small	intestine
17	chr11:45266000-45266600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:45266000-45267600	Enhancers	Fetal Intestine Large	intestine
19	chr11:45266000-45271600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:45266200-45267000	Weak transcription	Brain Germinal Matrix	brain

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