Variant report

Variant	rs11038675
Chromosome Location	chr11:45851903-45851904
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45851162..45853664-chr11:45855593..45858334,2	K562	blood:
2	chr11:45841559..45843906-chr11:45850042..45852854,2	K562	blood:
3	chr11:45850331..45852679-chr11:45862063..45864793,2	K562	blood:
4	chr11:45850402..45851915-chr11:45867932..45870706,2	MCF-7	breast:
5	chr11:45850331..45852679-chr11:45862063..45866263,3	K562	blood:

Variant related genes	Relation type
ENSG00000121671	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10462026	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10838519	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs10838526	0.92[EUR][1000 genomes]
rs11038668	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038670	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11038671	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11038679	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11038680	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11038683	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11038685	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11038686	0.93[EUR][1000 genomes]
rs11038689	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs12364060	0.85[CEU][hapmap];0.81[CHB][hapmap];0.80[EUR][1000 genomes]
rs1401417	0.95[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs17787106	0.92[EUR][1000 genomes]
rs17787136	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs4756026	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4756029	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4756030	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756032	0.93[EUR][1000 genomes]
rs4756036	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55923741	0.90[EUR][1000 genomes]
rs56152508	0.93[EUR][1000 genomes]
rs56330140	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7121775	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs7123390	0.81[EUR][1000 genomes]
rs72900638	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72900650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72900652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72900692	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72900694	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72902412	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72902436	0.93[EUR][1000 genomes]
rs72902439	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11038675	MAPK8IP1	cis	Whole Blood	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45845800-45869000	Weak transcription	Right Atrium	heart
2	chr11:45846000-45855800	Weak transcription	Ovary	ovary
3	chr11:45848400-45855800	Weak transcription	Left Ventricle	heart
4	chr11:45850400-45852400	Weak transcription	Brain Angular Gyrus	brain
5	chr11:45851000-45854000	Weak transcription	Placenta	Placenta
6	chr11:45851600-45853200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr11:45851800-45852800	Weak transcription	Psoas Muscle	Psoas
8	chr11:45851800-45853600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr11:45851800-45855800	Weak transcription	Adipose Nuclei	Adipose

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