Variant report

Variant	rs17787136
Chromosome Location	chr11:45894636-45894637
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:45894042..45894935-chr11:46027854..46028664,3	MCF-7	breast:
2	chr11:45890946..45892640-chr11:45894531..45897564,3	K562	blood:
3	chr11:45886181..45890653-chr11:45894511..45897195,4	K562	blood:
4	chr11:45867957..45870667-chr11:45891635..45895689,3	MCF-7	breast:
5	chr11:45886812..45888929-chr11:45892499..45894637,2	MCF-7	breast:
6	chr11:45868135..45869868-chr11:45893880..45895946,2	MCF-7	breast:
7	chr11:45894350..45895204-chr11:45939786..45940626,3	K562	blood:
8	chr11:45894297..45894854-chr11:45986083..45986742,2	MCF-7	breast:
9	chr11:45894001..45894886-chr11:45986563..45987094,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction
ENSG00000121671	Chromatin interaction
ENSG00000121680	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10462026	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838519	0.81[CEU][hapmap]
rs10838526	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038668	0.90[CEU][hapmap];0.91[GIH][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs11038670	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs11038671	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs11038675	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs11038679	0.88[EUR][1000 genomes]
rs11038680	0.88[EUR][1000 genomes]
rs11038683	0.89[EUR][1000 genomes]
rs11038685	0.89[EUR][1000 genomes]
rs11038686	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11038689	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.97[MKK][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038699	0.80[ASW][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038700	1.00[ASN][1000 genomes]
rs12364060	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1401417	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787106	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756026	0.81[TSI][hapmap]
rs4756030	0.86[EUR][1000 genomes]
rs4756032	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756036	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923741	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56152508	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56330140	0.88[EUR][1000 genomes]
rs7121775	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.97[MKK][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7123390	1.00[ASW][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];0.81[TSI][hapmap];0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs72900638	0.83[EUR][1000 genomes]
rs72900650	0.83[EUR][1000 genomes]
rs72900652	0.83[EUR][1000 genomes]
rs72900692	0.89[EUR][1000 genomes]
rs72900694	0.89[EUR][1000 genomes]
rs72902412	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902436	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902439	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877412	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17787136	MAPK8IP1	cis	multi-tissue	Pritchard
rs17787136	MAPK8IP1	cis	Skin Sun Exposed Lower leg	GTEx
rs17787136	MAPK8IP1	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45874200-45904200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:45875200-45905600	Strong transcription	Primary T cells from cord blood	blood
3	chr11:45875800-45904200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr11:45876400-45904200	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr11:45876800-45895600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr11:45876800-45895600	Strong transcription	Thymus	Thymus
7	chr11:45876800-45900200	Strong transcription	Primary B cells from cord blood	blood
8	chr11:45876800-45903600	Strong transcription	Primary B cells from peripheral blood	blood
9	chr11:45876800-45904600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:45877000-45895600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:45877400-45899800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:45877400-45900200	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:45877400-45903800	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:45877400-45904200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:45879200-45901200	Weak transcription	A549	lung
16	chr11:45880000-45903400	Strong transcription	Placenta Amnion	Placenta Amnion
17	chr11:45880200-45904600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:45880400-45904200	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr11:45880600-45904600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr11:45881200-45905200	Strong transcription	Fetal Intestine Large	intestine
21	chr11:45881600-45895600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:45881600-45895800	Strong transcription	Fetal Brain Female	brain
23	chr11:45881800-45895600	Strong transcription	Gastric	stomach
24	chr11:45881800-45900200	Strong transcription	Brain Germinal Matrix	brain
25	chr11:45881800-45900400	Strong transcription	Fetal Intestine Small	intestine
26	chr11:45882000-45900000	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:45882000-45900200	Strong transcription	Duodenum Mucosa	Duodenum
28	chr11:45882000-45902000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:45882000-45904800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr11:45882200-45895000	Strong transcription	Pancreas	Pancrea
31	chr11:45882200-45900000	Strong transcription	Ovary	ovary
32	chr11:45882200-45900200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:45882200-45900400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:45882400-45897600	Strong transcription	Fetal Lung	lung
35	chr11:45882400-45900200	Strong transcription	Spleen	Spleen
36	chr11:45882600-45895800	Strong transcription	Colonic Mucosa	Colon
37	chr11:45882600-45900000	Strong transcription	Fetal Muscle Trunk	muscle
38	chr11:45882600-45900000	Strong transcription	Right Ventricle	heart
39	chr11:45882600-45902000	Strong transcription	Fetal Stomach	stomach
40	chr11:45882600-45902600	Strong transcription	Fetal Muscle Leg	muscle
41	chr11:45882600-45902800	Weak transcription	Right Atrium	heart
42	chr11:45882600-45905200	Strong transcription	Liver	Liver
43	chr11:45882800-45902600	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:45883000-45895200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:45883000-45901600	Strong transcription	Colon Smooth Muscle	Colon
46	chr11:45883400-45902400	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr11:45883800-45897000	Strong transcription	Left Ventricle	heart
48	chr11:45883800-45901400	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:45883800-45901600	Strong transcription	Rectal Smooth Muscle	rectum
50	chr11:45883800-45905000	Strong transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links