Variant report

Variant	rs72902436
Chromosome Location	chr11:45881792-45881793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:45881240-45881813	IMR90	lung:	n/a	n/a
2	CEBPB	chr11:45881417-45881794	ECC-1	luminal epithelium:	n/a	n/a
3	MXI1	chr11:45880061-45882054	IMR90	lung:	n/a	n/a
4	MAZ	chr11:45880953-45883171	IMR90	lung:	n/a	n/a
5	EP300	chr11:45881029-45881800	ECC-1	luminal epithelium:	n/a	chr11:45881363-45881372
6	EP300	chr11:45880937-45882576	SK-N-SH	brain:	n/a	chr11:45881363-45881372
7	TEAD4	chr11:45881155-45881805	ECC-1	luminal epithelium:	n/a	n/a
8	TCF12	chr11:45880918-45881857	ECC-1	luminal epithelium:	n/a	n/a
9	TCF12	chr11:45881252-45881800	SK-N-SH	brain:	n/a	n/a
10	NFIC	chr11:45881035-45881836	ECC-1	luminal epithelium:	n/a	n/a
11	POLR2A	chr11:45881317-45882016	K562	blood:	n/a	n/a
12	MXI1	chr11:45880691-45882313	SK-N-SH	brain:	n/a	n/a
13	TCF12	chr11:45881078-45881873	SK-N-SH	brain:	n/a	n/a
14	CEBPB	chr11:45881160-45881795	ECC-1	luminal epithelium:	n/a	n/a
15	RCOR1	chr11:45881089-45882361	IMR90	lung:	n/a	n/a
16	NFIC	chr11:45881061-45881817	SK-N-SH	brain:	n/a	n/a
17	CEBPB	chr11:45881163-45881808	IMR90	lung:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:45880145..45882972-chr11:45886972..45889474,2	MCF-7	breast:
2	chr11:45879797..45882942-chr11:45890045..45892313,4	K562	blood:
3	chr11:45880127..45882891-chr11:45927875..45929936,2	K562	blood:
4	chr11:45880518..45884528-chr11:45890317..45893534,5	MCF-7	breast:

No data

Variant related genes	Relation type
CRY2	TF binding region
ENSG00000121671	Chromatin interaction
ENSG00000255498	Chromatin interaction
ENSG00000234776	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10462026	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838526	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038668	0.90[EUR][1000 genomes]
rs11038670	0.92[EUR][1000 genomes]
rs11038671	0.92[EUR][1000 genomes]
rs11038675	0.93[EUR][1000 genomes]
rs11038679	0.98[EUR][1000 genomes]
rs11038680	0.98[EUR][1000 genomes]
rs11038683	0.98[EUR][1000 genomes]
rs11038685	0.98[EUR][1000 genomes]
rs11038686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11038689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038699	1.00[ASN][1000 genomes]
rs11038700	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038703	0.83[EUR][1000 genomes]
rs12364060	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787106	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787136	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756030	0.95[EUR][1000 genomes]
rs4756032	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756036	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923741	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56152508	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56330140	0.98[EUR][1000 genomes]
rs7121775	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7123390	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900638	0.92[EUR][1000 genomes]
rs72900650	0.92[EUR][1000 genomes]
rs72900652	0.92[EUR][1000 genomes]
rs72900692	0.98[EUR][1000 genomes]
rs72900694	0.98[EUR][1000 genomes]
rs72902412	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902439	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877412	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs72902436	MAPK8IP1	cis	Whole Blood	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45869800-45883600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45874200-45904200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr11:45875200-45882600	Genic enhancers	Liver	Liver
4	chr11:45875200-45905600	Strong transcription	Primary T cells from cord blood	blood
5	chr11:45875400-45893400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:45875800-45904200	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr11:45876400-45904200	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:45876600-45882600	Genic enhancers	Fetal Muscle Trunk	muscle
9	chr11:45876600-45882600	Enhancers	Right Atrium	heart
10	chr11:45876800-45881800	Enhancers	Right Ventricle	heart
11	chr11:45876800-45882600	Genic enhancers	Fetal Muscle Leg	muscle
12	chr11:45876800-45882600	Genic enhancers	Fetal Stomach	stomach
13	chr11:45876800-45894000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:45876800-45895600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr11:45876800-45895600	Strong transcription	Thymus	Thymus
16	chr11:45876800-45900200	Strong transcription	Primary B cells from cord blood	blood
17	chr11:45876800-45903600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr11:45876800-45904600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:45877000-45885800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:45877000-45885800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
21	chr11:45877000-45885800	Strong transcription	Dnd41	blood
22	chr11:45877000-45885800	Strong transcription	GM12878-XiMat	blood
23	chr11:45877000-45885800	Strong transcription	K562	blood
24	chr11:45877000-45886000	Strong transcription	HepG2	liver
25	chr11:45877000-45893200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:45877000-45895600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:45877200-45881800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr11:45877200-45882600	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:45877200-45883800	Genic enhancers	Left Ventricle	heart
30	chr11:45877200-45886000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:45877200-45893200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:45877400-45882600	Genic enhancers	Lung	lung
33	chr11:45877400-45887200	Strong transcription	Primary hematopoietic stem cells	blood
34	chr11:45877400-45899800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
35	chr11:45877400-45900200	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr11:45877400-45903800	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr11:45877400-45904200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:45877600-45882400	Genic enhancers	Osteobl	bone
39	chr11:45877600-45882800	Genic enhancers	Brain Cingulate Gyrus	brain
40	chr11:45877800-45881800	Genic enhancers	Gastric	stomach
41	chr11:45878400-45882000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:45878400-45882000	Genic enhancers	Duodenum Mucosa	Duodenum
43	chr11:45878400-45882400	Genic enhancers	Spleen	Spleen
44	chr11:45878600-45881800	Genic enhancers	Fetal Kidney	kidney
45	chr11:45878600-45881800	Enhancers	HUVEC	blood vessel
46	chr11:45878600-45882000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr11:45878600-45885800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr11:45878600-45888200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr11:45878800-45881800	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr11:45878800-45882000	Genic enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links