Variant report

Variant	rs11041705
Chromosome Location	chr11:8022345-8022346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8021034..8023077-chr11:8027438..8029926,2	K562	blood:
2	chr11:8015926..8019399-chr11:8021894..8024855,4	K562	blood:

Variant related genes	Relation type
ENSG00000175390	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11041703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041704	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417944	1.00[ASN][1000 genomes]
rs12420107	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12421289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397596	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4548609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758263	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs56071931	1.00[ASN][1000 genomes]
rs56391804	1.00[ASN][1000 genomes]
rs56392532	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57424199	1.00[ASN][1000 genomes]
rs61879577	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66473380	1.00[ASN][1000 genomes]
rs67181930	1.00[ASN][1000 genomes]
rs67238148	1.00[ASN][1000 genomes]
rs67876487	1.00[ASN][1000 genomes]
rs73412938	1.00[ASN][1000 genomes]
rs73412945	1.00[ASN][1000 genomes]
rs73412998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951923	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8010600-8022400	Strong transcription	Primary B cells from cord blood	blood
2	chr11:8010800-8033400	Weak transcription	Right Atrium	heart
3	chr11:8011200-8022800	Strong transcription	HSMM	muscle
4	chr11:8012800-8022400	Strong transcription	Liver	Liver
5	chr11:8012800-8022600	Strong transcription	A549	lung
6	chr11:8012800-8022800	Strong transcription	Fetal Muscle Leg	muscle
7	chr11:8013200-8022400	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:8016600-8025600	Weak transcription	Fetal Heart	heart
9	chr11:8017800-8024800	Weak transcription	Esophagus	oesophagus
10	chr11:8018000-8031800	Weak transcription	Aorta	Aorta
11	chr11:8018400-8032000	Weak transcription	Right Ventricle	heart
12	chr11:8019000-8023200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:8019400-8024600	Weak transcription	Fetal Brain Male	brain
14	chr11:8019600-8022800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:8020000-8023000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:8020000-8023600	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:8020000-8024200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:8020000-8024400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:8020000-8024800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr11:8020000-8028200	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:8020000-8033000	Weak transcription	NHDF-Ad	bronchial
22	chr11:8020200-8022400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:8020200-8023000	Weak transcription	Ovary	ovary
24	chr11:8020200-8023600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:8020200-8023800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:8020200-8024200	Weak transcription	NHEK	skin
27	chr11:8020200-8024600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:8020200-8025400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:8020200-8025400	Weak transcription	Brain Germinal Matrix	brain
30	chr11:8020200-8026600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:8020400-8022600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:8020400-8023800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:8020400-8023800	Weak transcription	NH-A	brain
34	chr11:8020600-8022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:8020600-8022400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:8020600-8023000	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr11:8020600-8023000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:8020600-8023000	Weak transcription	HUVEC	blood vessel
39	chr11:8020600-8025200	Weak transcription	HSMMtube	muscle
40	chr11:8020800-8022400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:8020800-8022400	Weak transcription	Psoas Muscle	Psoas
42	chr11:8020800-8022600	Weak transcription	Colonic Mucosa	Colon
43	chr11:8020800-8023000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr11:8020800-8023000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:8020800-8023400	Weak transcription	Gastric	stomach
46	chr11:8020800-8024400	Weak transcription	Fetal Intestine Large	intestine
47	chr11:8020800-8024800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:8020800-8026400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:8021200-8022800	Weak transcription	Placenta	Placenta
50	chr11:8021200-8023400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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