Variant report

Variant	rs61879577
Chromosome Location	chr11:8008486-8008487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr11:8008290-8008991	Hela-S3	cervix:	n/a	n/a
2	ELF1	chr11:8008254-8009064	GM12878	blood:	n/a	n/a
3	POLR2A	chr11:8008467-8009390	K562	blood:	n/a	n/a
4	MAX	chr11:8008468-8008992	Hela-S3	cervix:	n/a	chr11:8008813-8008824
5	YY1	chr11:8008389-8009133	K562	blood:	n/a	n/a
6	YY1	chr11:8008426-8009136	SK-N-SH_RA	brain:	n/a	n/a
7	ZNF263	chr11:8008180-8009282	HEK293-T-REx	kidney:	n/a	n/a
8	RAD21	chr11:8008235-8008851	ECC-1	luminal epithelium:	n/a	chr11:8008617-8008630 chr11:8008609-8008628
9	USF1	chr11:8008446-8009057	A549	lung:	n/a	n/a
10	EP300	chr11:8008421-8008965	H1-hESC	embryonic stem cell:	n/a	chr11:8008617-8008633
11	CHD2	chr11:8008364-8008952	K562	blood:	n/a	n/a
12	SMC3	chr11:8008015-8008887	Hela-S3	cervix:	n/a	chr11:8008613-8008627
13	RAD21	chr11:8008335-8008873	A549	lung:	n/a	chr11:8008617-8008630 chr11:8008609-8008628
14	CTCF	chr11:8008485-8008770	HUVEC	blood vessel:	n/a	chr11:8008606-8008627 chr11:8008616-8008629 chr11:8008611-8008629
15	CTCF	chr11:8008248-8008883	GM12878	blood:	n/a	chr11:8008606-8008627 chr11:8008616-8008629 chr11:8008611-8008629
16	RAD21	chr11:8008352-8008891	HepG2	liver:	n/a	chr11:8008617-8008630 chr11:8008609-8008628
17	POLR2A	chr11:8008471-8008487	Gliobla	brain:	n/a	n/a
18	JUND	chr11:8008428-8008966	A549	lung:	n/a	chr11:8008792-8008801
19	USF1	chr11:8008428-8009050	A549	lung:	n/a	n/a
20	CTCF	chr11:8008457-8008770	GM12878	blood:	n/a	chr11:8008606-8008627 chr11:8008616-8008629 chr11:8008611-8008629
21	POLR2A	chr11:8008434-8009097	HCT-116	colon:	n/a	n/a
22	EBF1	chr11:8008468-8008867	GM12878	blood:	n/a	n/a
23	CTCF	chr11:8008376-8008894	K562	blood:	n/a	chr11:8008606-8008627 chr11:8008616-8008629 chr11:8008611-8008629
24	JUN	chr11:8008155-8009030	K562	blood:	n/a	chr11:8008792-8008801
25	TBL1XR1	chr11:8008423-8008892	K562	blood:	n/a	n/a
26	IRF3	chr11:8008451-8008984	Hela-S3	cervix:	n/a	chr11:8008790-8008799
27	CREB1	chr11:8008252-8009061	A549	lung:	n/a	n/a
28	FOXM1	chr11:8008315-8009094	ECC-1	luminal epithelium:	n/a	n/a
29	RCOR1	chr11:8008431-8008904	HepG2	liver:	n/a	n/a
30	MAZ	chr11:8008241-8009162	IMR90	lung:	n/a	chr11:8008813-8008824
31	NFIC	chr11:8008329-8009106	GM12878	blood:	n/a	n/a
32	RELA	chr11:8008442-8009033	GM10847	blood:	n/a	n/a
33	MYC	chr11:8008449-8009286	K562	blood:	n/a	chr11:8008813-8008824
34	CHD2	chr11:8008286-8008879	HepG2	liver:	n/a	n/a
35	RAD21	chr11:8008403-8008815	MCF-7	breast:	n/a	chr11:8008617-8008630 chr11:8008609-8008628
36	ZNF384	chr11:8007989-8008932	K562	blood:	n/a	n/a
37	CTCF	chr11:8008352-8008828	A549	lung:	n/a	chr11:8008606-8008627 chr11:8008616-8008629 chr11:8008611-8008629
38	YY1	chr11:8008482-8009097	K562	blood:	n/a	n/a
39	SMC3	chr11:8007690-8009083	SK-N-SH	brain:	n/a	chr11:8008613-8008627
40	ZKSCAN1	chr11:8008173-8008890	Hela-S3	cervix:	n/a	n/a
41	MAZ	chr11:8008293-8008982	Hela-S3	cervix:	n/a	chr11:8008813-8008824
42	STAT5A	chr11:8008291-8008948	GM12878	blood:	n/a	n/a
43	GABPA	chr11:8008346-8009068	SK-N-SH	brain:	n/a	n/a
44	EP300	chr11:8008367-8008957	ECC-1	luminal epithelium:	n/a	chr11:8008617-8008633
45	MTA3	chr11:8008428-8008939	GM12878	blood:	n/a	n/a
46	E2F4	chr11:8008453-8008919	K562	blood:	n/a	n/a
47	RELA	chr11:8008464-8008950	GM19099	blood:	n/a	n/a
48	CTCF	chr11:8008390-8008870	IMR90	lung:	n/a	chr11:8008606-8008627 chr11:8008616-8008629 chr11:8008611-8008629
49	STAT3	chr11:8008418-8008928	GM12878	blood:	n/a	n/a
50	CREB1	chr11:8008341-8009041	GM12878	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:8008448-8008498	AG09309	skin:	n/a
2	chr11:8008448-8008498	BE2_C	brain:	n/a
3	chr11:8008448-8008498	ECC-1	luminal epithelium:	n/a
4	chr11:8008448-8008498	SKMC	muscle:	n/a
5	chr11:8008448-8008498	Hela-S3	cervix:	n/a
6	chr11:8008448-8008498	LNCaP	prostate:	n/a
7	chr11:8008448-8008498	HEEpiC	esophagus:	n/a
8	chr11:8008448-8008498	K562	blood:	n/a
9	chr11:8008448-8008498	AG04450	lung:	fetal
10	chr11:8008448-8008498	HIPEpiC	eye:	n/a
11	chr11:8008448-8008498	IMR90	lung:	fetal
12	chr11:8008448-8008498	BJ	skin:	n/a
13	chr11:8008448-8008498	Hepatocyte	liver:	n/a
14	chr11:8008448-8008498	A549	lung:	n/a
15	chr11:8008448-8008498	Caco-2	colon:	n/a
16	chr11:8008448-8008498	ovcar-3	ovarian:	n/a
17	chr11:8008448-8008498	Jurkat	blood:	n/a
18	chr11:8008448-8008498	GM12878	blood:	n/a
19	chr11:8008448-8008498	HAEpiC	amniotic membrane:	n/a
20	chr11:8008448-8008498	HCPEpiC	choroid plexus:	n/a
21	chr11:8008448-8008498	NHBE	bronchial:	n/a
22	chr11:8008448-8008498	CMK	blood:	n/a
23	chr11:8008448-8008498	HCF	heart:	n/a
24	chr11:8008448-8008498	AG04449	skin:	fetal
25	chr11:8008448-8008498	NH-A	brain:	n/a
26	chr11:8008448-8008498	ProgFib	skin:	n/a
27	chr11:8008448-8008498	GM12892	blood:	n/a
28	chr11:8008448-8008498	HL-60	blood:	n/a
29	chr11:8008448-8008498	SK-N-SH	brain:	n/a
30	chr11:8008448-8008498	AG09319	gingival:	n/a
31	chr11:8008448-8008498	HRPEpiC	eye:	n/a
32	chr11:8008448-8008498	SK-N-SH_RA	brain:	n/a
33	chr11:8008448-8008498	U87	brain:	n/a
34	chr11:8008448-8008498	HEK293	kidney:	embryo
35	chr11:8008448-8008498	NB4	blood:	n/a
36	chr11:8008448-8008498	NT2-D1	testis:	n/a
37	chr11:8008448-8008498	HRE	kidney:	n/a
38	chr11:8008448-8008498	H1-hESC	embryonic stem cell:	embryo
39	chr11:8008448-8008498	GM19239	blood:	n/a
40	chr11:8008448-8008498	MCF-7	breast:	n/a
41	chr11:8008448-8008498	PFSK-1	brain:	n/a
42	chr11:8008448-8008498	HNPCEpiC	eye:	n/a
43	chr11:8008448-8008498	SK-N-MC	brain:	n/a
44	chr11:8008448-8008498	HRCEpiC	kidney:	n/a
45	chr11:8008448-8008498	NHDF-neo	bronchial:	n/a
46	chr11:8008448-8008498	GM06990	blood:	n/a
47	chr11:8008448-8008498	PANC-1	pancreas:	n/a
48	chr11:8008448-8008498	MCF10A-Er-Src	breast:	n/a
49	chr11:8008448-8008498	HCM	heart:	n/a
50	chr11:8008448-8008498	PrEC	prostate:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8008425..8011151-chr11:8011381..8013712,2	MCF-7	breast:
2	chr11:7926202..7927585-chr11:8008101..8008920,6	MCF-7	breast:

Variant related genes	Relation type
EIF3F	TF binding region
EIF3F	CpG island
ENSG00000175390	Chromatin interaction
ENSG00000254951	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11041703	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041704	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041705	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417944	1.00[ASN][1000 genomes]
rs12420107	1.00[ASN][1000 genomes]
rs12421289	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397596	1.00[ASN][1000 genomes]
rs4548609	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758263	1.00[ASN][1000 genomes]
rs56071931	1.00[ASN][1000 genomes]
rs56391804	1.00[ASN][1000 genomes]
rs56392532	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57424199	1.00[ASN][1000 genomes]
rs66473380	1.00[ASN][1000 genomes]
rs67181930	1.00[ASN][1000 genomes]
rs67238148	1.00[ASN][1000 genomes]
rs67876487	1.00[ASN][1000 genomes]
rs73412938	1.00[ASN][1000 genomes]
rs73412945	1.00[ASN][1000 genomes]
rs73412998	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951923	1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:7997000-8008800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:8005800-8008800	Weak transcription	Spleen	Spleen
3	chr11:8007600-8008600	Flanking Active TSS	Dnd41	blood
4	chr11:8007800-8008600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr11:8007800-8008600	Flanking Active TSS	HMEC	breast
6	chr11:8007800-8008600	Flanking Active TSS	NHLF	lung
7	chr11:8007800-8009400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:8007800-8009400	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr11:8007800-8009600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:8007800-8009600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:8008000-8008600	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr11:8008000-8008600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr11:8008000-8008600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr11:8008000-8008600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr11:8008000-8008600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:8008000-8008600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:8008000-8008600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:8008000-8008600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr11:8008000-8008600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:8008000-8008600	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr11:8008000-8008600	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr11:8008000-8008600	Flanking Active TSS	HUVEC	blood vessel
23	chr11:8008000-8008600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr11:8008000-8008600	Flanking Active TSS	NHEK	skin
25	chr11:8008000-8008600	Flanking Active TSS	Osteobl	bone
26	chr11:8008000-8009400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:8008000-8009400	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr11:8008000-8009400	Active TSS	Stomach Smooth Muscle	stomach
29	chr11:8008000-8009600	Active TSS	Brain Germinal Matrix	brain
30	chr11:8008000-8009600	Active TSS	Brain Substantia Nigra	brain
31	chr11:8008000-8009800	Active TSS	A549	lung
32	chr11:8008000-8010000	Active TSS	Right Atrium	heart
33	chr11:8008000-8010400	Active TSS	Psoas Muscle	Psoas
34	chr11:8008200-8008600	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:8008200-8008600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:8008200-8008600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:8008200-8008600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
38	chr11:8008200-8008600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
39	chr11:8008200-8008600	Flanking Active TSS	Primary hematopoietic stem cells	blood
40	chr11:8008200-8008600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:8008200-8008600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr11:8008200-8008600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:8008200-8008600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:8008200-8008600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:8008200-8008600	Flanking Active TSS	Liver	Liver
46	chr11:8008200-8008600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr11:8008200-8008600	Flanking Active TSS	Fetal Brain Female	brain
48	chr11:8008200-8008600	Flanking Active TSS	Fetal Intestine Large	intestine
49	chr11:8008200-8008600	Flanking Active TSS	Fetal Intestine Small	intestine
50	chr11:8008200-8008600	Flanking Active TSS	Fetal Muscle Trunk	muscle

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