Variant report

Variant	rs11041717
Chromosome Location	chr11:8054933-8054934
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8054442..8055441-chr11:8091763..8092397,3	K562	blood:
2	chr11:8054420..8055367-chr11:8120731..8121254,3	K562	blood:
3	chr11:8054286..8054971-chr11:8112084..8112598,2	MCF-7	breast:
4	chr11:8054647..8055179-chr11:8112054..8112947,2	MCF-7	breast:
5	chr11:8054475..8055081-chr11:8091864..8092628,2	MCF-7	breast:
6	chr11:8054438..8055155-chr11:8108441..8109253,4	MCF-7	breast:
7	chr11:8054438..8054991-chr11:8113935..8114446,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10734628	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041732	1.00[CHB][hapmap]
rs11601971	1.00[CHB][hapmap]
rs11823329	1.00[CHB][hapmap]
rs1918849	1.00[CHB][hapmap]
rs2141322	1.00[CHB][hapmap]
rs2178152	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs36206808	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4483583	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55635402	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939493	1.00[CHB][hapmap]
rs7941439	1.00[CHB][hapmap]
rs7952059	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8051600-8056000	Enhancers	Right Ventricle	heart
2	chr11:8052800-8055800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:8053000-8055400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:8054000-8055400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:8054000-8055800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr11:8054200-8055000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:8054200-8055200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:8054200-8055400	Bivalent Enhancer	Brain Hippocampus Middle	brain
9	chr11:8054200-8055400	Enhancers	Fetal Lung	lung
10	chr11:8054200-8055400	Enhancers	HSMM	muscle
11	chr11:8054200-8055600	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr11:8054200-8055600	Enhancers	Placenta	Placenta
13	chr11:8054200-8057800	Enhancers	Fetal Heart	heart
14	chr11:8054400-8055000	Bivalent Enhancer	Fetal Stomach	stomach
15	chr11:8054400-8055200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:8054400-8055200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:8054400-8055200	Enhancers	Brain Angular Gyrus	brain
18	chr11:8054400-8055200	Flanking Active TSS	Colon Smooth Muscle	Colon
19	chr11:8054400-8055200	Enhancers	Left Ventricle	heart
20	chr11:8054400-8055200	Enhancers	NHDF-Ad	bronchial
21	chr11:8054400-8055400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:8054400-8055400	Enhancers	Brain Substantia Nigra	brain
23	chr11:8054400-8055400	Enhancers	NHLF	lung
24	chr11:8054400-8056200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr11:8054400-8057200	Enhancers	Fetal Intestine Small	intestine
26	chr11:8054600-8055000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:8054600-8055000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
28	chr11:8054600-8055000	Bivalent Enhancer	Duodenum Mucosa	Duodenum
29	chr11:8054600-8055000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
30	chr11:8054600-8055000	Bivalent Enhancer	Stomach Mucosa	stomach
31	chr11:8054600-8055000	Active TSS	Hela-S3	cervix
32	chr11:8054600-8055200	Enhancers	H1 Cell Line	embryonic stem cell
33	chr11:8054600-8055200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:8054600-8055200	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr11:8054600-8055200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:8054600-8055200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
37	chr11:8054600-8055200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:8054600-8055200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:8054600-8055200	Enhancers	Liver	Liver
40	chr11:8054600-8055200	Enhancers	Colonic Mucosa	Colon
41	chr11:8054600-8055200	Enhancers	Pancreas	Pancrea
42	chr11:8054600-8055200	Enhancers	Rectal Smooth Muscle	rectum
43	chr11:8054600-8055400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
44	chr11:8054600-8055400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:8054600-8055400	Enhancers	Brain Cingulate Gyrus	brain
46	chr11:8054600-8055400	Enhancers	Right Atrium	heart
47	chr11:8054600-8055400	Enhancers	HSMMtube	muscle
48	chr11:8054600-8055400	Enhancers	NH-A	brain
49	chr11:8054600-8055800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:8054600-8056600	Enhancers	Brain Anterior Caudate	brain

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