Variant report

Variant	rs11041732
Chromosome Location	chr11:8093801-8093802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8085796..8088311-chr11:8090818..8094631,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10734628	1.00[CHB][hapmap]
rs11601971	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11821236	0.87[ASN][1000 genomes]
rs11822728	0.87[ASN][1000 genomes]
rs11823329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1406096	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881233	0.87[ASN][1000 genomes]
rs1881239	0.94[EUR][1000 genomes]
rs1918849	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2141322	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2178152	1.00[CHB][hapmap]
rs35326533	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35807385	0.87[ASN][1000 genomes]
rs36113068	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4483583	1.00[CHB][hapmap]
rs55642260	0.87[ASN][1000 genomes]
rs55810550	0.87[ASN][1000 genomes]
rs55953869	0.87[ASN][1000 genomes]
rs55961279	0.87[ASN][1000 genomes]
rs56242213	0.87[ASN][1000 genomes]
rs56657031	0.87[ASN][1000 genomes]
rs58666270	0.87[ASN][1000 genomes]
rs59924750	0.87[ASN][1000 genomes]
rs7112750	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113956	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124782	0.94[ASN][1000 genomes]
rs73396771	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396784	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74052193	0.87[ASN][1000 genomes]
rs74052195	0.87[ASN][1000 genomes]
rs74052196	0.87[ASN][1000 genomes]
rs74052199	0.87[ASN][1000 genomes]
rs7926428	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7939493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7941439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8091200-8094400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:8091600-8100200	Weak transcription	Pancreas	Pancrea
3	chr11:8092600-8094800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr11:8092600-8095000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:8092800-8094800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
6	chr11:8093000-8101800	Weak transcription	Fetal Brain Female	brain
7	chr11:8093200-8094400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:8093200-8095400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:8093400-8094000	Enhancers	Fetal Thymus	thymus
10	chr11:8093400-8094200	Enhancers	Brain Hippocampus Middle	brain
11	chr11:8093400-8095600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:8093400-8095600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr11:8093600-8094000	Enhancers	Brain Angular Gyrus	brain
14	chr11:8093600-8094200	Enhancers	Brain Germinal Matrix	brain
15	chr11:8093600-8094400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:8093600-8094400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:8093600-8094400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr11:8093600-8094400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:8093600-8094600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr11:8093600-8094800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:8093600-8095200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:8093600-8095400	Enhancers	Brain Anterior Caudate	brain
23	chr11:8093800-8094000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
24	chr11:8093800-8094000	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:8093800-8094000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:8093800-8094000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
27	chr11:8093800-8094000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:8093800-8094000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr11:8093800-8094200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
30	chr11:8093800-8094600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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