Variant report

Variant	rs73396784
Chromosome Location	chr11:8095355-8095356
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11041732	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601971	0.87[ASN][1000 genomes]
rs11821236	0.87[ASN][1000 genomes]
rs11822728	0.87[ASN][1000 genomes]
rs11823329	0.87[ASN][1000 genomes]
rs1406096	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881233	0.87[ASN][1000 genomes]
rs1881239	0.94[EUR][1000 genomes]
rs1918849	0.87[ASN][1000 genomes]
rs2141322	0.87[ASN][1000 genomes]
rs35326533	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35807385	0.87[ASN][1000 genomes]
rs36113068	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55642260	0.87[ASN][1000 genomes]
rs55810550	0.87[ASN][1000 genomes]
rs55953869	0.87[ASN][1000 genomes]
rs55961279	0.87[ASN][1000 genomes]
rs56242213	0.87[ASN][1000 genomes]
rs56657031	0.87[ASN][1000 genomes]
rs58666270	0.87[ASN][1000 genomes]
rs59924750	0.87[ASN][1000 genomes]
rs7112750	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113956	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124782	0.94[ASN][1000 genomes]
rs73396771	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74052193	0.87[ASN][1000 genomes]
rs74052195	0.87[ASN][1000 genomes]
rs74052196	0.87[ASN][1000 genomes]
rs74052199	0.87[ASN][1000 genomes]
rs7926428	0.81[ASN][1000 genomes]
rs7939493	0.87[ASN][1000 genomes]
rs7941439	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8091600-8100200	Weak transcription	Pancreas	Pancrea
2	chr11:8093000-8101800	Weak transcription	Fetal Brain Female	brain
3	chr11:8093200-8095400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:8093400-8095600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:8093400-8095600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr11:8093600-8095400	Enhancers	Brain Anterior Caudate	brain
7	chr11:8094000-8095400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr11:8094000-8101800	Weak transcription	Brain Angular Gyrus	brain
9	chr11:8094000-8101800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:8094400-8095400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:8094400-8100800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:8094400-8101200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:8095000-8095600	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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