Variant report

Variant	rs7124782
Chromosome Location	chr11:8090115-8090116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8084754..8086469-chr11:8088768..8090631,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EIF3F-1	chr11:8089157-8090920	ENSG00000248332

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11041732	0.94[ASN][1000 genomes]
rs11601971	0.81[ASN][1000 genomes]
rs11821236	0.81[ASN][1000 genomes]
rs11822728	0.81[ASN][1000 genomes]
rs11823329	0.81[ASN][1000 genomes]
rs1406096	0.94[ASN][1000 genomes]
rs1881233	0.81[ASN][1000 genomes]
rs1918849	0.81[ASN][1000 genomes]
rs2141322	0.81[ASN][1000 genomes]
rs35326533	0.94[ASN][1000 genomes]
rs35807385	0.81[ASN][1000 genomes]
rs36113068	0.94[ASN][1000 genomes]
rs55642260	0.81[ASN][1000 genomes]
rs55810550	0.81[ASN][1000 genomes]
rs55953869	0.81[ASN][1000 genomes]
rs55961279	0.81[ASN][1000 genomes]
rs56242213	0.81[ASN][1000 genomes]
rs56657031	0.81[ASN][1000 genomes]
rs58666270	0.81[ASN][1000 genomes]
rs59924750	0.81[ASN][1000 genomes]
rs7112750	0.94[ASN][1000 genomes]
rs7113956	0.94[ASN][1000 genomes]
rs73396771	0.94[ASN][1000 genomes]
rs73396784	0.94[ASN][1000 genomes]
rs74052193	0.81[ASN][1000 genomes]
rs74052195	0.81[ASN][1000 genomes]
rs74052196	0.81[ASN][1000 genomes]
rs74052199	0.81[ASN][1000 genomes]
rs7939493	0.81[ASN][1000 genomes]
rs7941439	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8078200-8090400	Enhancers	Adipose Nuclei	Adipose
2	chr11:8078400-8091400	Weak transcription	Esophagus	oesophagus
3	chr11:8080600-8091600	Enhancers	Right Ventricle	heart
4	chr11:8082800-8093600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:8083000-8090600	Enhancers	Left Ventricle	heart
6	chr11:8085200-8090200	Weak transcription	Brain Substantia Nigra	brain
7	chr11:8085200-8090600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:8085800-8093800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:8086600-8090400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:8087200-8092000	Enhancers	Fetal Heart	heart
11	chr11:8087400-8090400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:8087800-8091600	Enhancers	Right Atrium	heart
13	chr11:8088200-8090600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:8088400-8090400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:8088600-8091600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr11:8088800-8090200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:8088800-8091600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr11:8088800-8093600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:8088800-8093600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:8089000-8092200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:8089000-8092400	Enhancers	Fetal Stomach	stomach
22	chr11:8089200-8090400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr11:8089200-8090400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr11:8089400-8090200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr11:8089400-8091600	Enhancers	Placenta	Placenta
26	chr11:8089600-8090200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:8089600-8090400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:8089600-8090400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:8089600-8090400	Enhancers	NHLF	lung
30	chr11:8089600-8091600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:8089600-8091600	Enhancers	Fetal Intestine Small	intestine
32	chr11:8089600-8091600	Enhancers	Fetal Muscle Leg	muscle
33	chr11:8089600-8092800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr11:8089800-8090200	Enhancers	Osteobl	bone
35	chr11:8089800-8090400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:8089800-8090400	Enhancers	Brain Hippocampus Middle	brain
37	chr11:8089800-8090400	Enhancers	Colonic Mucosa	Colon
38	chr11:8089800-8090400	Enhancers	Pancreas	Pancrea
39	chr11:8089800-8090400	Enhancers	NHDF-Ad	bronchial
40	chr11:8089800-8090600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:8089800-8090600	Enhancers	Duodenum Mucosa	Duodenum
42	chr11:8089800-8090600	Enhancers	Fetal Thymus	thymus
43	chr11:8089800-8090800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:8089800-8090800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:8089800-8090800	Enhancers	Lung	lung
46	chr11:8089800-8091200	Enhancers	Fetal Brain Female	brain
47	chr11:8089800-8091600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:8089800-8091600	Enhancers	Fetal Intestine Large	intestine
49	chr11:8089800-8091600	Enhancers	Fetal Lung	lung
50	chr11:8089800-8091600	Enhancers	Ovary	ovary

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