Variant report
| Variant | rs56657031 |
|---|---|
| Chromosome Location | chr11:8071575-8071576 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11041732 | 0.87[ASN][1000 genomes] |
| rs11601971 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11821236 | 1.00[ASN][1000 genomes] |
| rs11822728 | 1.00[ASN][1000 genomes] |
| rs11823329 | 1.00[ASN][1000 genomes] |
| rs1406096 | 0.87[ASN][1000 genomes] |
| rs1881233 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1918849 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2141322 | 1.00[ASN][1000 genomes] |
| rs35326533 | 0.87[ASN][1000 genomes] |
| rs35807385 | 1.00[ASN][1000 genomes] |
| rs36113068 | 0.87[ASN][1000 genomes] |
| rs55642260 | 1.00[ASN][1000 genomes] |
| rs55810550 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55953869 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55961279 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56242213 | 1.00[ASN][1000 genomes] |
| rs58666270 | 1.00[ASN][1000 genomes] |
| rs59924750 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7112750 | 0.87[ASN][1000 genomes] |
| rs7113956 | 0.87[ASN][1000 genomes] |
| rs7124782 | 0.81[ASN][1000 genomes] |
| rs73396771 | 0.87[ASN][1000 genomes] |
| rs73396784 | 0.87[ASN][1000 genomes] |
| rs74052193 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74052195 | 1.00[ASN][1000 genomes] |
| rs74052196 | 1.00[ASN][1000 genomes] |
| rs74052199 | 1.00[ASN][1000 genomes] |
| rs7939493 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7941439 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1052808 | chr11:8011647-8129191 | Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | esv1829170 | chr11:8068594-8216369 | Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv428249 | chr11:8068594-8216369 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:8061200-8076200 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
