Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10734628	1.00[CHB][hapmap]
rs11041732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11601971	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11821236	1.00[ASN][1000 genomes]
rs11822728	1.00[ASN][1000 genomes]
rs11823329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1406096	0.87[ASN][1000 genomes]
rs1881233	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1918849	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2178152	1.00[CHB][hapmap]
rs35326533	0.87[ASN][1000 genomes]
rs35807385	1.00[ASN][1000 genomes]
rs36113068	0.87[ASN][1000 genomes]
rs4483583	1.00[CHB][hapmap]
rs55642260	1.00[ASN][1000 genomes]
rs55810550	1.00[ASN][1000 genomes]
rs55953869	1.00[ASN][1000 genomes]
rs55961279	1.00[ASN][1000 genomes]
rs56242213	1.00[ASN][1000 genomes]
rs56657031	1.00[ASN][1000 genomes]
rs58666270	1.00[ASN][1000 genomes]
rs59924750	1.00[ASN][1000 genomes]
rs7112750	0.87[ASN][1000 genomes]
rs7113956	0.87[ASN][1000 genomes]
rs7124782	0.81[ASN][1000 genomes]
rs73396771	0.87[ASN][1000 genomes]
rs73396784	0.87[ASN][1000 genomes]
rs74052193	1.00[ASN][1000 genomes]
rs74052195	1.00[ASN][1000 genomes]
rs74052196	1.00[ASN][1000 genomes]
rs74052199	1.00[ASN][1000 genomes]
rs7926428	1.00[JPT][hapmap]
rs7939493	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7941439	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2141322	OR10A5	cis	parietal	SCAN
rs2141322	TMEM9B	cis	parietal	SCAN
rs2141322	SBF2	cis	parietal	SCAN
rs2141322	OR52I1	cis	cerebellum	SCAN
rs2141322	OR56A3	cis	parietal	SCAN
rs2141322	OR52H1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8061200-8076200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:8067400-8067800	Enhancers	Fetal Heart	heart
3	chr11:8067400-8067800	Enhancers	Left Ventricle	heart
4	chr11:8067400-8067800	Enhancers	Right Atrium	heart

Quick Search: