Variant report

Variant	rs11042299
Chromosome Location	chr11:9365210-9365211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10770021	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042302	0.88[EUR][1000 genomes]
rs4910041	0.85[ASN][1000 genomes]
rs4910042	0.96[ASN][1000 genomes]
rs6486282	1.00[ASN][1000 genomes]
rs7104373	0.94[ASN][1000 genomes]
rs72850592	0.91[EUR][1000 genomes]
rs7926348	0.97[ASN][1000 genomes]
rs7931959	0.97[ASN][1000 genomes]
rs7935301	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
4	nsv521969	chr11:9334961-9379005	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv975322	chr11:9363750-9395226	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9351200-9368800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:9353200-9368800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:9359200-9365400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:9365000-9366000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr11:9365200-9365600	Bivalent Enhancer	HepG2	liver
6	chr11:9365200-9365800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:9365200-9366000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr11:9365200-9366000	Enhancers	Fetal Thymus	thymus
9	chr11:9365200-9366200	Enhancers	Primary T cells from cord blood	blood
10	chr11:9365200-9366200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:9365200-9366200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:9365200-9366400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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