Variant report

Variant	rs11042302
Chromosome Location	chr11:9369195-9369196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9368708..9370210-chr11:9480305..9483007,2	K562	blood:
2	chr11:9363321..9365351-chr11:9367412..9370052,2	K562	blood:
3	chr11:9367453..9371339-chr11:9383916..9387622,3	K562	blood:
4	chr11:9368736..9371339-chr11:9384685..9387958,4	K562	blood:

Variant related genes	Relation type
ENSG00000268403	Chromatin interaction
ENSG00000166478	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10770021	0.84[EUR][1000 genomes]
rs11042299	0.88[EUR][1000 genomes]
rs72850592	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
4	nsv521969	chr11:9334961-9379005	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv975322	chr11:9363750-9395226	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9368000-9369800	Enhancers	Primary T cells from cord blood	blood
2	chr11:9368000-9369800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:9368000-9370000	Enhancers	Fetal Thymus	thymus
4	chr11:9368200-9369800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:9368400-9369200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:9368400-9369200	Enhancers	Fetal Heart	heart
7	chr11:9368400-9369400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr11:9368400-9369600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr11:9368400-9369600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr11:9368400-9369800	Enhancers	Primary hematopoietic stem cells	blood
11	chr11:9368400-9370000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:9368600-9369200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr11:9368600-9369200	Enhancers	Dnd41	blood
14	chr11:9368600-9369200	Enhancers	K562	blood
15	chr11:9368600-9369400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:9368600-9369400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr11:9368600-9369600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr11:9368600-9369600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:9368600-9369600	Enhancers	Thymus	Thymus
20	chr11:9368600-9370000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr11:9368600-9370200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr11:9368600-9370600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:9368800-9369200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr11:9368800-9369400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr11:9368800-9369600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:9368800-9369600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:9368800-9369800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:9368800-9370000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:9368800-9370400	Enhancers	H1 Cell Line	embryonic stem cell
30	chr11:9368800-9370400	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr11:9369000-9369600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr11:9369000-9369600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:9369000-9369800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:9369000-9370000	Enhancers	HUES64 Cell Line	embryonic stem cell

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