Variant report

Variant	rs72850592
Chromosome Location	chr11:9365958-9365959
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9359007..9361004-chr11:9364116..9366769,2	K562	blood:
2	chr11:9332980..9334576-chr11:9365269..9367532,2	K562	blood:
3	chr11:9358815..9361399-chr11:9364116..9367086,4	K562	blood:

Variant related genes	Relation type
ENSG00000254884	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10770018	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10770021	0.87[EUR][1000 genomes]
rs11042299	0.91[EUR][1000 genomes]
rs11042302	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
4	nsv521969	chr11:9334961-9379005	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv975322	chr11:9363750-9395226	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9351200-9368800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:9353200-9368800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:9365000-9366000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:9365200-9366000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr11:9365200-9366000	Enhancers	Fetal Thymus	thymus
6	chr11:9365200-9366200	Enhancers	Primary T cells from cord blood	blood
7	chr11:9365200-9366200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr11:9365200-9366200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:9365200-9366400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:9365400-9366000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:9365400-9366000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:9365400-9366000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr11:9365400-9366000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr11:9365400-9366200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:9365400-9366200	Enhancers	Primary hematopoietic stem cells	blood
16	chr11:9365600-9366000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr11:9365600-9366200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:9365800-9366000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:9365800-9366000	Flanking Active TSS	HepG2	liver
20	chr11:9365800-9366200	Enhancers	Fetal Heart	heart
21	chr11:9365800-9368000	Weak transcription	Thymus	Thymus
22	chr11:9365800-9368600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:9365800-9368800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr11:9365800-9368800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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