Variant report

Variant	rs11042769
Chromosome Location	chr11:10405452-10405453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10770108	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11042762	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042770	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042772	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1597448	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1597449	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16907747	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2198008	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2198009	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2198010	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2403305	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2403306	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2923085	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2923086	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2923087	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2923088	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2923115	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2923116	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2923117	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2923120	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2923121	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2923122	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2923124	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2923125	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2957658	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957664	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2957665	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2957666	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2957667	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2957668	0.90[ASN][1000 genomes]
rs2957669	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2957670	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2957675	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2957677	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2957678	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2957679	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5015228	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6416051	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7112833	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7117816	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7117951	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7934497	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1037131	chr11:10401998-10429998	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv553477	chr11:10403539-10429998	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10400600-10407200	Weak transcription	Ovary	ovary
2	chr11:10401800-10407200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:10401800-10407200	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:10401800-10407200	Weak transcription	Lung	lung
5	chr11:10401800-10407200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:10402000-10407200	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:10402000-10407200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:10402000-10407200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:10402200-10407200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:10402200-10407200	Weak transcription	NHDF-Ad	bronchial
11	chr11:10402800-10408400	Weak transcription	Esophagus	oesophagus
12	chr11:10403000-10407200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:10403400-10408400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:10403800-10407200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:10403800-10407200	Weak transcription	Adipose Nuclei	Adipose
16	chr11:10404000-10407200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:10404000-10407200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:10404000-10407400	Weak transcription	Osteobl	bone
19	chr11:10404600-10407200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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