Variant report

Variant	rs2957678
Chromosome Location	chr11:10407955-10407956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10770108	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042762	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042769	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042770	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042772	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1597448	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1597449	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907747	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2198008	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2198009	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2198010	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2403305	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2403306	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2923085	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2923086	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2923087	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2923088	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2923115	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2923116	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2923117	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2923120	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2923121	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2923122	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2923124	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2923125	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2957658	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2957664	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2957665	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2957666	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2957667	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957668	0.90[ASN][1000 genomes]
rs2957669	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957670	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2957675	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957677	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957679	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4910129	0.80[ASN][1000 genomes]
rs5015228	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6416051	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112833	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7117816	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7117951	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7934497	0.95[CHB][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1037131	chr11:10401998-10429998	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv553477	chr11:10403539-10429998	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10402800-10408400	Weak transcription	Esophagus	oesophagus
2	chr11:10403400-10408400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:10407200-10408200	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr11:10407200-10408200	Enhancers	Stomach Smooth Muscle	stomach
5	chr11:10407200-10408400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:10407200-10408400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:10407200-10408600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:10407200-10408800	Enhancers	Fetal Muscle Leg	muscle
9	chr11:10407200-10410000	Enhancers	HSMM	muscle
10	chr11:10407200-10410400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr11:10407200-10410600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr11:10407200-10410800	Enhancers	Colon Smooth Muscle	Colon
13	chr11:10407200-10411000	Enhancers	Ovary	ovary
14	chr11:10407200-10411000	Enhancers	NHLF	lung
15	chr11:10407200-10412800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:10407200-10412800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:10407200-10412800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:10407200-10412800	Enhancers	Adipose Nuclei	Adipose
19	chr11:10407400-10410400	Enhancers	Rectal Smooth Muscle	rectum
20	chr11:10407400-10411000	Enhancers	Fetal Stomach	stomach
21	chr11:10407600-10408000	Enhancers	Psoas Muscle	Psoas
22	chr11:10407600-10408000	Weak transcription	Osteobl	bone
23	chr11:10407600-10409400	Weak transcription	Lung	lung
24	chr11:10407600-10409400	Weak transcription	Right Atrium	heart
25	chr11:10407600-10410000	Enhancers	HSMMtube	muscle
26	chr11:10407800-10408400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:10407800-10412200	Enhancers	NHDF-Ad	bronchial

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