Variant report

Variant	rs1597448
Chromosome Location	chr11:10394013-10394014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10392636..10395590-chr11:10550744..10552472,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10770108	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042762	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042769	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042770	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11042772	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1597449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907747	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2198008	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2198009	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2198010	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2403305	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2403306	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2403308	0.83[AFR][1000 genomes]
rs2923085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2923086	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2923087	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2923088	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2923115	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2923116	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2923117	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2923120	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2923121	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2923122	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2923124	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2923125	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2957658	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957664	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2957665	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2957666	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2957667	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2957668	0.87[ASN][1000 genomes]
rs2957669	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2957670	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2957675	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2957677	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2957678	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2957679	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4910129	0.80[ASN][1000 genomes]
rs5015228	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6416051	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7112833	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7117816	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7117951	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7934497	0.95[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10388600-10396200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:10388800-10394200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:10388800-10394800	Weak transcription	Ovary	ovary
4	chr11:10388800-10401400	Weak transcription	Esophagus	oesophagus
5	chr11:10389000-10394800	Weak transcription	Lung	lung
6	chr11:10389000-10394800	Weak transcription	Psoas Muscle	Psoas
7	chr11:10389000-10394800	Weak transcription	Spleen	Spleen
8	chr11:10389000-10394800	Weak transcription	Osteobl	bone
9	chr11:10389000-10401400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:10389000-10401600	Weak transcription	Right Atrium	heart
11	chr11:10389400-10394800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:10389800-10394800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:10390000-10394800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:10391800-10396000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:10391800-10403800	Enhancers	Adipose Nuclei	Adipose
16	chr11:10392000-10398000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:10392600-10396200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:10392800-10394200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:10392800-10394200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:10392800-10403000	Enhancers	NHLF	lung
21	chr11:10393400-10395400	Enhancers	Liver	Liver
22	chr11:10393800-10395200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:10393800-10395800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:10394000-10394600	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links