Variant report

Variant	rs11042785
Chromosome Location	chr11:10430886-10430887
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10430515..10432971-chr11:10830663..10832576,2	K562	blood:
2	chr11:10430604..10432437-chr11:10665017..10667381,2	K562	blood:
3	chr11:10427808..10432250-chr11:10475440..10478017,5	K562	blood:

Variant related genes	Relation type
ENSG00000246308	Chromatin interaction
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10840405	0.96[ASN][1000 genomes]
rs10840406	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10840409	0.96[ASN][1000 genomes]
rs11042784	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11042787	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11042790	0.96[ASN][1000 genomes]
rs11042796	0.95[ASN][1000 genomes]
rs11042801	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11042804	0.81[JPT][hapmap]
rs11606772	0.95[ASN][1000 genomes]
rs11608046	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12049855	0.95[ASN][1000 genomes]
rs12225465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12226767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10415600-10436000	Weak transcription	Right Ventricle	heart
2	chr11:10427200-10431000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:10427200-10431200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:10427200-10432600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr11:10427400-10431200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:10427400-10431400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:10427400-10432400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:10427400-10432800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:10427600-10432800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:10427800-10435000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:10427800-10435200	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:10427800-10436000	Weak transcription	HSMMtube	muscle
13	chr11:10428000-10431000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr11:10428200-10435200	Weak transcription	Dnd41	blood
15	chr11:10428600-10431200	Enhancers	Fetal Brain Male	brain
16	chr11:10429000-10432600	Weak transcription	Brain Substantia Nigra	brain
17	chr11:10429000-10434000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:10429000-10436000	Enhancers	Placenta	Placenta
19	chr11:10429200-10431800	Enhancers	Placenta Amnion	Placenta Amnion
20	chr11:10429600-10431800	Weak transcription	K562	blood
21	chr11:10429600-10432000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:10429800-10431000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:10429800-10432600	Weak transcription	Esophagus	oesophagus
24	chr11:10429800-10433800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:10429800-10433800	Weak transcription	NHEK	skin
26	chr11:10429800-10435400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:10429800-10435400	Weak transcription	Left Ventricle	heart
28	chr11:10429800-10436200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:10430000-10435200	Weak transcription	NHDF-Ad	bronchial
30	chr11:10430000-10441000	Weak transcription	Right Atrium	heart
31	chr11:10430200-10431800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:10430200-10432400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:10430400-10431400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:10430400-10431400	Enhancers	Stomach Smooth Muscle	stomach
35	chr11:10430400-10431600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr11:10430400-10431600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr11:10430400-10431600	Enhancers	Fetal Thymus	thymus
38	chr11:10430400-10431800	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr11:10430400-10431800	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr11:10430400-10432400	Enhancers	Primary T cells fromperipheralblood	blood
41	chr11:10430400-10432400	Enhancers	Primary hematopoietic stem cells	blood
42	chr11:10430400-10432800	Enhancers	Psoas Muscle	Psoas
43	chr11:10430600-10431000	Enhancers	Primary T cells from cord blood	blood
44	chr11:10430600-10431200	Enhancers	Adipose Nuclei	Adipose
45	chr11:10430600-10431200	Enhancers	Brain Angular Gyrus	brain
46	chr11:10430600-10431200	Enhancers	Fetal Brain Female	brain
47	chr11:10430600-10431200	Enhancers	Spleen	Spleen
48	chr11:10430600-10431200	Bivalent Enhancer	HepG2	liver
49	chr11:10430600-10431200	Enhancers	HUVEC	blood vessel
50	chr11:10430600-10431400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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