Variant report

Variant	rs12049855
Chromosome Location	chr11:10436896-10436897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10436479..10438481-chr11:10470802..10472872,2	K562	blood:

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10840405	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840406	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840409	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042784	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042785	0.95[ASN][1000 genomes]
rs11042787	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042790	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042796	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042801	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606772	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225465	0.95[ASN][1000 genomes]
rs12226767	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10430000-10441000	Weak transcription	Right Atrium	heart
2	chr11:10432800-10438000	Weak transcription	Psoas Muscle	Psoas
3	chr11:10434400-10438400	Enhancers	Primary hematopoietic stem cells	blood
4	chr11:10434600-10437000	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:10434600-10437000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr11:10434600-10437200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:10434600-10437800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:10434600-10438400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:10434800-10437600	Enhancers	Adipose Nuclei	Adipose
10	chr11:10435000-10437000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr11:10435000-10437000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr11:10435000-10437000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:10435000-10437200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr11:10435000-10437200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:10435000-10437200	Enhancers	Fetal Thymus	thymus
16	chr11:10435200-10437000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:10435200-10437000	Enhancers	Thymus	Thymus
18	chr11:10435200-10437200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:10435200-10437200	Enhancers	Dnd41	blood
20	chr11:10435200-10437400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:10435400-10437000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:10435400-10437000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr11:10435400-10437600	Enhancers	Duodenum Mucosa	Duodenum
24	chr11:10435400-10437600	Enhancers	Fetal Muscle Leg	muscle
25	chr11:10435400-10438400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr11:10435600-10437000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr11:10435600-10437200	Enhancers	Spleen	Spleen
28	chr11:10435600-10437400	Enhancers	K562	blood
29	chr11:10435800-10437200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr11:10435800-10437400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:10436000-10437000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:10436000-10437200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:10436000-10437200	Enhancers	Colon Smooth Muscle	Colon
34	chr11:10436000-10437200	Weak transcription	Placenta	Placenta
35	chr11:10436000-10438800	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr11:10436200-10437400	Enhancers	HMEC	breast
37	chr11:10436200-10437600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:10436400-10437400	Enhancers	Primary T cells from cord blood	blood
39	chr11:10436400-10437800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:10436600-10437000	Weak transcription	NHDF-Ad	bronchial
41	chr11:10436600-10439400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:10436600-10439600	Weak transcription	Osteobl	bone
43	chr11:10436600-10439800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:10436800-10437200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:10436800-10437400	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr11:10436800-10437600	Enhancers	NHEK	skin
47	chr11:10436800-10439000	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr11:10436800-10439800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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