Variant report

Variant	rs11045919
Chromosome Location	chr12:21422253-21422254
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10505872	1.00[CEU][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs11045926	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11045927	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12298817	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12300594	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12303996	0.99[EUR][1000 genomes]
rs12317843	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16923597	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17333047	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs3764041	0.93[CEU][hapmap]
rs4078	1.00[CEU][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs4140389	0.93[CEU][hapmap]
rs4149005	0.93[CEU][hapmap];0.80[YRI][hapmap]
rs4149008	0.93[CEU][hapmap];0.83[YRI][hapmap]
rs60594228	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61926244	0.99[EUR][1000 genomes]
rs61926247	0.99[EUR][1000 genomes]
rs61926248	0.99[EUR][1000 genomes]
rs61926249	0.95[EUR][1000 genomes]
rs61926252	0.97[EUR][1000 genomes]
rs61926253	0.96[EUR][1000 genomes]
rs61927760	0.97[EUR][1000 genomes]
rs61927761	0.97[EUR][1000 genomes]
rs61927763	0.95[EUR][1000 genomes]
rs61927778	0.92[EUR][1000 genomes]
rs61927779	0.90[EUR][1000 genomes]
rs61927780	0.92[EUR][1000 genomes]
rs61927781	0.87[EUR][1000 genomes]
rs61927782	0.92[EUR][1000 genomes]
rs61927783	0.92[EUR][1000 genomes]
rs61927784	0.92[EUR][1000 genomes]
rs61927785	0.92[EUR][1000 genomes]
rs61927786	0.87[EUR][1000 genomes]
rs61927787	0.92[EUR][1000 genomes]
rs61927788	0.92[EUR][1000 genomes]
rs61927789	0.92[EUR][1000 genomes]
rs722994	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs7955581	0.93[CEU][hapmap];0.80[YRI][hapmap]
rs7967354	0.93[CEU][hapmap];0.83[YRI][hapmap]
rs7974575	1.00[CEU][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs7980167	0.92[EUR][1000 genomes]
rs7980490	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948700	chr12:21008498-21422492	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898883	chr12:21294293-21450917	Enhancers Active TSS Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv898886	chr12:21354494-21450250	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv898888	chr12:21355537-21426087	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv557734	chr12:21421255-21425513	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
6	nsv898889	chr12:21421343-21426087	Strong transcription Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv898890	chr12:21421343-21441918	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases
8	esv1820723	chr12:21421770-21425513	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
9	nsv898891	chr12:21422253-21453355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21411000-21460400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:21416200-21449600	Weak transcription	Brain Hippocampus Middle	brain
3	chr12:21416200-21473600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr12:21417000-21429800	Weak transcription	Brain Substantia Nigra	brain
5	chr12:21417200-21425800	Weak transcription	Brain Anterior Caudate	brain
6	chr12:21421800-21425800	Weak transcription	Liver	Liver

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