Variant report

Variant	rs61926244
Chromosome Location	chr12:21419365-21419366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10505872	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11045919	0.99[EUR][1000 genomes]
rs11045926	1.00[EUR][1000 genomes]
rs11045927	1.00[EUR][1000 genomes]
rs12298817	1.00[EUR][1000 genomes]
rs12300594	1.00[EUR][1000 genomes]
rs12303996	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12317843	1.00[EUR][1000 genomes]
rs17333047	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4078	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60594228	0.99[EUR][1000 genomes]
rs61926247	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926248	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926249	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61926252	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61926253	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61927760	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61927761	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61927763	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61927777	0.85[AMR][1000 genomes]
rs61927778	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61927779	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61927780	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61927781	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61927782	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61927783	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61927784	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61927785	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61927786	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61927787	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61927788	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61927789	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs722994	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7974575	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7980167	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7980490	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948700	chr12:21008498-21422492	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv515735	chr12:21010048-21420712	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1052587	chr12:21149131-21420712	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1050396	chr12:21152478-21420712	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv898883	chr12:21294293-21450917	Enhancers Active TSS Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv898886	chr12:21354494-21450250	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv898888	chr12:21355537-21426087	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21411000-21460400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:21415800-21420000	Weak transcription	Liver	Liver
3	chr12:21416200-21449600	Weak transcription	Brain Hippocampus Middle	brain
4	chr12:21416200-21473600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr12:21417000-21429800	Weak transcription	Brain Substantia Nigra	brain
6	chr12:21417200-21425800	Weak transcription	Brain Anterior Caudate	brain
7	chr12:21418200-21421200	Enhancers	Primary monocytes fromperipheralblood	blood

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