Variant report

Variant	rs17333047
Chromosome Location	chr12:21474669-21474670
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10505872	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11045919	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs11045926	0.94[EUR][1000 genomes]
rs11045927	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs12298817	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12300594	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs12303996	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12317843	0.94[EUR][1000 genomes]
rs16923597	1.00[CEU][hapmap];0.95[TSI][hapmap]
rs3764041	0.93[CEU][hapmap]
rs4078	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4140389	0.93[CEU][hapmap]
rs4149005	0.93[CEU][hapmap]
rs4149008	0.93[CEU][hapmap]
rs60594228	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61926244	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61926247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61926248	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61926249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61926252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61926253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61927760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61927761	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61927763	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61927777	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61927778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61927779	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61927780	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61927781	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61927782	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61927783	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61927784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61927785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61927786	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61927787	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61927788	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61927789	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs722994	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7955581	0.93[CEU][hapmap]
rs7958005	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs7967354	0.93[CEU][hapmap]
rs7974575	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7980167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7980490	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs991262	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21473800-21477800	Active TSS	Brain Angular Gyrus	brain
2	chr12:21473800-21477800	Active TSS	Brain Cingulate Gyrus	brain
3	chr12:21473800-21478200	Active TSS	Brain Anterior Caudate	brain
4	chr12:21474600-21474800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
5	chr12:21474600-21474800	Flanking Active TSS	Brain Substantia Nigra	brain
6	chr12:21474600-21477800	Active TSS	Brain Hippocampus Middle	brain

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