Variant report

Variant	rs61927777
Chromosome Location	chr12:21463772-21463773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10505872	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12303996	0.82[AMR][1000 genomes]
rs17333047	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4078	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61926244	0.85[AMR][1000 genomes]
rs61926247	0.88[AMR][1000 genomes]
rs61926248	0.82[AMR][1000 genomes]
rs61926249	0.88[AMR][1000 genomes]
rs61926252	0.88[AMR][1000 genomes]
rs61926253	0.88[AMR][1000 genomes]
rs61927760	0.88[AMR][1000 genomes]
rs61927761	0.82[AMR][1000 genomes]
rs61927763	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61927776	0.82[AMR][1000 genomes]
rs61927778	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61927779	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61927780	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61927781	0.84[AMR][1000 genomes]
rs61927782	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61927783	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61927784	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61927785	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61927786	0.85[AMR][1000 genomes]
rs61927787	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61927788	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61927789	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs722994	0.88[AMR][1000 genomes]
rs7974575	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7980167	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7980490	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21416200-21473600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:21461000-21464400	Weak transcription	Brain Hippocampus Middle	brain
3	chr12:21461000-21467000	Weak transcription	Brain Anterior Caudate	brain
4	chr12:21461000-21473800	Weak transcription	Brain Angular Gyrus	brain
5	chr12:21463600-21466000	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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