Variant report

Variant	rs11047861
Chromosome Location	chr12:9046534-9046535
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10047511	1.00[AMR][1000 genomes]
rs11048285	1.00[AMR][1000 genomes]
rs12297064	1.00[AMR][1000 genomes]
rs12308647	1.00[AMR][1000 genomes]
rs12321827	1.00[AMR][1000 genomes]
rs12322201	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049949	chr12:9008609-9049198	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9034000-9049600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:9043600-9053600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:9043800-9046600	Weak transcription	Ovary	ovary
4	chr12:9043800-9048400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:9046400-9046600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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