Variant report

Variant	rs11047949
Chromosome Location	chr12:25461320-25461321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11047941	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11047950	0.80[AMR][1000 genomes]
rs12228660	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12366504	0.83[AMR][1000 genomes]
rs12810616	0.83[AMR][1000 genomes]
rs12811282	0.83[AMR][1000 genomes]
rs4257070	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4277200	0.83[AMR][1000 genomes]
rs4379918	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4438136	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4497495	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4539422	0.83[AMR][1000 genomes]
rs4644713	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7299741	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7304544	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7485340	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10137	chr12:25455511-25469350	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25456600-25461400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:25460200-25462600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr12:25460600-25461600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr12:25460600-25462200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:25461000-25461600	Enhancers	Osteobl	bone
6	chr12:25461200-25461800	Enhancers	NHLF	lung
7	chr12:25461200-25462000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:25461200-25462000	Enhancers	NH-A	brain
9	chr12:25461200-25462200	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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