Variant report

Variant	rs12228660
Chromosome Location	chr12:25465897-25465898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10842528	0.82[EUR][1000 genomes]
rs10842529	0.83[EUR][1000 genomes]
rs10842531	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11047941	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11047943	0.82[EUR][1000 genomes]
rs11047944	0.82[EUR][1000 genomes]
rs11047945	0.82[EUR][1000 genomes]
rs11047946	0.82[EUR][1000 genomes]
rs11047947	0.82[EUR][1000 genomes]
rs11047948	0.82[EUR][1000 genomes]
rs11047949	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11519081	0.82[EUR][1000 genomes]
rs12231590	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12366504	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12810616	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12811282	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3885678	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3885680	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4257069	0.82[EUR][1000 genomes]
rs4257070	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4264235	0.82[EUR][1000 genomes]
rs4277200	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4379918	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4438135	0.82[EUR][1000 genomes]
rs4438136	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4442633	0.81[EUR][1000 genomes]
rs4497495	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539422	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4644713	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4963866	0.81[EUR][1000 genomes]
rs4963867	0.80[EUR][1000 genomes]
rs4963868	0.80[EUR][1000 genomes]
rs4963869	0.82[EUR][1000 genomes]
rs59307134	0.82[EUR][1000 genomes]
rs60655178	0.82[EUR][1000 genomes]
rs7299445	0.82[EUR][1000 genomes]
rs7299741	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7300820	0.81[EUR][1000 genomes]
rs7302911	0.82[EUR][1000 genomes]
rs7304544	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7307496	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7314063	0.81[EUR][1000 genomes]
rs7314324	0.82[EUR][1000 genomes]
rs7485340	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10137	chr12:25455511-25469350	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25464800-25466400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr12:25465000-25466200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:25465000-25466400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr12:25465200-25466200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:25465400-25466000	Enhancers	NHEK	skin
6	chr12:25465800-25466000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:25465800-25466400	Enhancers	HMEC	breast
8	chr12:25465800-25466600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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